miRNA display CGI


Results 1 - 20 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 138069 0.66 0.736529
Target:  5'- gGCGgCgGCGGCaGCGGUCcugGUCCcGCg -3'
miRNA:   3'- aCGCaGgCGCCG-CGCUAGca-CAGG-UG- -5'
23575 3' -59.6 NC_005261.1 + 137057 0.67 0.671893
Target:  5'- gGCcccggCCGCGGCGCGGgccggcgcgCGUggaagugcucuccucGUCCGCg -3'
miRNA:   3'- aCGca---GGCGCCGCGCUa--------GCA---------------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 136922 0.68 0.607882
Target:  5'- cGCGgCCGCGGCGCauGUgGUGguacaugggCCGCg -3'
miRNA:   3'- aCGCaGGCGCCGCGc-UAgCACa--------GGUG- -5'
23575 3' -59.6 NC_005261.1 + 136839 0.68 0.627899
Target:  5'- cGCGgCCGCGGCGCccggCGUGgCCu- -3'
miRNA:   3'- aCGCaGGCGCCGCGcua-GCACaGGug -5'
23575 3' -59.6 NC_005261.1 + 136506 0.66 0.726918
Target:  5'- cGCGcaCCGCGGUGCc--CGUGccgCCGCg -3'
miRNA:   3'- aCGCa-GGCGCCGCGcuaGCACa--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 136451 0.69 0.548457
Target:  5'- cUGCGgcucugCCGCGGCGCcaaCGUGcgCUACa -3'
miRNA:   3'- -ACGCa-----GGCGCCGCGcuaGCACa-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 136300 0.66 0.726918
Target:  5'- cGCGgugcugcCCGCGGCGCa---GUGcgCCGCg -3'
miRNA:   3'- aCGCa------GGCGCCGCGcuagCACa-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 136190 0.75 0.282987
Target:  5'- cUGCGgcuggCCGCGGCGCGGcggcggcugaUCGUGaUCgACg -3'
miRNA:   3'- -ACGCa----GGCGCCGCGCU----------AGCAC-AGgUG- -5'
23575 3' -59.6 NC_005261.1 + 136149 0.73 0.353882
Target:  5'- cGCGggaccuggccuUCCGCGGCGCGGUCGaGUaCCu- -3'
miRNA:   3'- aCGC-----------AGGCGCCGCGCUAGCaCA-GGug -5'
23575 3' -59.6 NC_005261.1 + 134898 0.66 0.755481
Target:  5'- gGCG-CCGCGGCGCGGguggagGUGgaggaCAUg -3'
miRNA:   3'- aCGCaGGCGCCGCGCUag----CACag---GUG- -5'
23575 3' -59.6 NC_005261.1 + 134735 0.7 0.529022
Target:  5'- cGCGcUgGCGGCGCGAacCGUGgccCCGCu -3'
miRNA:   3'- aCGCaGgCGCCGCGCUa-GCACa--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 134323 0.68 0.607882
Target:  5'- gGCGcCgGCGGCGCGggCGcccgcgCCGCg -3'
miRNA:   3'- aCGCaGgCGCCGCGCuaGCaca---GGUG- -5'
23575 3' -59.6 NC_005261.1 + 133935 0.68 0.607882
Target:  5'- cGCGgcggCCGCGGggccCGCGGcCGUGUUCGu -3'
miRNA:   3'- aCGCa---GGCGCC----GCGCUaGCACAGGUg -5'
23575 3' -59.6 NC_005261.1 + 133834 0.66 0.755481
Target:  5'- cGCGgCCGCGuGCGCGc-CGUGgCCGg -3'
miRNA:   3'- aCGCaGGCGC-CGCGCuaGCACaGGUg -5'
23575 3' -59.6 NC_005261.1 + 133645 0.67 0.69765
Target:  5'- cGCG-CCGCuGCGCGAgcgcugCGUGcUCGCc -3'
miRNA:   3'- aCGCaGGCGcCGCGCUa-----GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 133351 0.71 0.46328
Target:  5'- gGCGgCCGCGGCugagGCGGccgUCGUGgCCGCc -3'
miRNA:   3'- aCGCaGGCGCCG----CGCU---AGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 133289 0.7 0.500368
Target:  5'- gGCGccugggCCGCGGCGCGGgcgcUCGcGgCCGCg -3'
miRNA:   3'- aCGCa-----GGCGCCGCGCU----AGCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 133168 0.66 0.746053
Target:  5'- gGCGUcgccgccgacaaCCGCGGCGCcGUCGaggaGUUCAUc -3'
miRNA:   3'- aCGCA------------GGCGCCGCGcUAGCa---CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 133135 0.67 0.657928
Target:  5'- gGCGgagCUGUGGCGC-AUgGUGgCCGCg -3'
miRNA:   3'- aCGCa--GGCGCCGCGcUAgCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 132796 0.7 0.490033
Target:  5'- uUGCcgccgCCGCGGcCGCGGUCGUcuccuucGUUCGCg -3'
miRNA:   3'- -ACGca---GGCGCC-GCGCUAGCA-------CAGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.