miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 88648 0.66 0.726918
Target:  5'- aGCG-CCGCGcGCccCGAgccCGUGUUCACg -3'
miRNA:   3'- aCGCaGGCGC-CGc-GCUa--GCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 3667 0.66 0.740349
Target:  5'- cUGCGcagCCGCGGCGCcgcccagcaaggggcGGUCacGUCUGCg -3'
miRNA:   3'- -ACGCa--GGCGCCGCG---------------CUAGcaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 105174 0.66 0.736529
Target:  5'- cGCGUCCcCGGCGCcgaGUCcUGgcccUCCGCg -3'
miRNA:   3'- aCGCAGGcGCCGCGc--UAGcAC----AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 38368 0.66 0.726918
Target:  5'- aGCGgCgGCGGCGCGcggCGgccgGUgCCGCu -3'
miRNA:   3'- aCGCaGgCGCCGCGCua-GCa---CA-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 136506 0.66 0.726918
Target:  5'- cGCGcaCCGCGGUGCc--CGUGccgCCGCg -3'
miRNA:   3'- aCGCa-GGCGCCGCGcuaGCACa--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 52662 0.66 0.717229
Target:  5'- cGCGgUCGCGGCGCcGAaccUCGcGgcgCCGCa -3'
miRNA:   3'- aCGCaGGCGCCGCG-CU---AGCaCa--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 90434 0.66 0.736529
Target:  5'- gGCG-CUGCGcGCGCGgAUCGggcccuUCCGCu -3'
miRNA:   3'- aCGCaGGCGC-CGCGC-UAGCac----AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 12210 0.66 0.736529
Target:  5'- cGCGgccgCGCGGCGCGAUCaa--CUACg -3'
miRNA:   3'- aCGCag--GCGCCGCGCUAGcacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 121076 0.66 0.717229
Target:  5'- cGCG-CCGCGG-GUGA-CG-GUCUACg -3'
miRNA:   3'- aCGCaGGCGCCgCGCUaGCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 29490 0.66 0.726918
Target:  5'- cGCGgacgCCGCGGCGCcgcCGcugGcCCGCg -3'
miRNA:   3'- aCGCa---GGCGCCGCGcuaGCa--CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 5861 0.66 0.746053
Target:  5'- aGCG-CCGCGaGCGCGGcgagCGcG-CCGCg -3'
miRNA:   3'- aCGCaGGCGC-CGCGCUa---GCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 104915 0.66 0.736529
Target:  5'- gGCGgCgGCGGCaGCGGUCcugGUCCcGCg -3'
miRNA:   3'- aCGCaGgCGCCG-CGCUAGca-CAGG-UG- -5'
23575 3' -59.6 NC_005261.1 + 32754 0.66 0.740349
Target:  5'- gGgGcCCGCGcGCcccgaggagcugaggGCGGcCGUGUCCGCg -3'
miRNA:   3'- aCgCaGGCGC-CG---------------CGCUaGCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 90293 0.66 0.736529
Target:  5'- cGCGcucgCgCGCGGCGCGcgggaCGUGacggCCGCg -3'
miRNA:   3'- aCGCa---G-GCGCCGCGCua---GCACa---GGUG- -5'
23575 3' -59.6 NC_005261.1 + 136300 0.66 0.726918
Target:  5'- cGCGgugcugcCCGCGGCGCa---GUGcgCCGCg -3'
miRNA:   3'- aCGCa------GGCGCCGCGcuagCACa-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 11227 0.66 0.746053
Target:  5'- cGcCGcCUGCGGCGgGGUCGgccccugacgGUCCGu -3'
miRNA:   3'- aC-GCaGGCGCCGCgCUAGCa---------CAGGUg -5'
23575 3' -59.6 NC_005261.1 + 69076 0.66 0.717229
Target:  5'- gGCG-CgGCGGCGCGGUgCGgguaGUUgGCg -3'
miRNA:   3'- aCGCaGgCGCCGCGCUA-GCa---CAGgUG- -5'
23575 3' -59.6 NC_005261.1 + 61171 0.66 0.736529
Target:  5'- cGCGgcaCCGgccaGGCGCGGUCGccgagGgCCGCg -3'
miRNA:   3'- aCGCa--GGCg---CCGCGCUAGCa----CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 12707 0.66 0.740349
Target:  5'- cUGCGg--GCGGCGCGAgCGUauaaaagccacuuggGUCUACa -3'
miRNA:   3'- -ACGCaggCGCCGCGCUaGCA---------------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 98755 0.66 0.726918
Target:  5'- -uCGUCCGCGGCGgGccCGuUGgggcgCCGCg -3'
miRNA:   3'- acGCAGGCGCCGCgCuaGC-ACa----GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.