miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 46804 0.7 0.481651
Target:  5'- cGCGUucaCCGCGGCgGCG-UCGcGcUCCACg -3'
miRNA:   3'- aCGCA---GGCGCCG-CGCuAGCaC-AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 122967 0.72 0.402075
Target:  5'- gGCGgcgCCGcCGGgGCGAUCGcgGcCCACu -3'
miRNA:   3'- aCGCa--GGC-GCCgCGCUAGCa-CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 19185 0.72 0.410503
Target:  5'- cGCGgCCGCgGGCGCGuuaccGUCGgcgacGUCCGCu -3'
miRNA:   3'- aCGCaGGCG-CCGCGC-----UAGCa----CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 4483 0.71 0.427684
Target:  5'- gGCGUCgauCGCGcGCGUGG-CGuUGUCCGCg -3'
miRNA:   3'- aCGCAG---GCGC-CGCGCUaGC-ACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 77891 0.71 0.436432
Target:  5'- cGCGgCCGCGGCGCcgcaaacacCGUcGUCCACc -3'
miRNA:   3'- aCGCaGGCGCCGCGcua------GCA-CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 67835 0.71 0.445283
Target:  5'- -uUGUgCGCGGCGCGucgugCGUGUCgGCc -3'
miRNA:   3'- acGCAgGCGCCGCGCua---GCACAGgUG- -5'
23575 3' -59.6 NC_005261.1 + 133351 0.71 0.46328
Target:  5'- gGCGgCCGCGGCugagGCGGccgUCGUGgCCGCc -3'
miRNA:   3'- aCGCaGGCGCCG----CGCU---AGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 28215 0.71 0.472421
Target:  5'- gGCGaaaggaCgGCGGCgccgGCGggCGUGUCCACg -3'
miRNA:   3'- aCGCa-----GgCGCCG----CGCuaGCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 66329 0.71 0.472421
Target:  5'- gUGCuggCCgGCGGCGCGGagcacuuuuUCGUGcCCGCg -3'
miRNA:   3'- -ACGca-GG-CGCCGCGCU---------AGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 115037 0.72 0.393757
Target:  5'- cUGCGggccCCGCGGCGCGcUCGcUGUCg-- -3'
miRNA:   3'- -ACGCa---GGCGCCGCGCuAGC-ACAGgug -5'
23575 3' -59.6 NC_005261.1 + 5650 0.72 0.385552
Target:  5'- gGCGUCCGCgGGCGCGccgaCGUcUUCGCa -3'
miRNA:   3'- aCGCAGGCG-CCGCGCua--GCAcAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 70055 0.72 0.377461
Target:  5'- gGgGcCCGCGGCGCGcgCGaGcUCCGCg -3'
miRNA:   3'- aCgCaGGCGCCGCGCuaGCaC-AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 63535 0.78 0.177236
Target:  5'- cGCGcCCGCGcggcggccagcucccGCGCGGUCGcGUCCGCg -3'
miRNA:   3'- aCGCaGGCGC---------------CGCGCUAGCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 58134 0.77 0.213323
Target:  5'- aGCcgGUaCCGCGGCGCGcgCGccgGUCCGCg -3'
miRNA:   3'- aCG--CA-GGCGCCGCGCuaGCa--CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 136190 0.75 0.282987
Target:  5'- cUGCGgcuggCCGCGGCGCGGcggcggcugaUCGUGaUCgACg -3'
miRNA:   3'- -ACGCa----GGCGCCGCGCU----------AGCAC-AGgUG- -5'
23575 3' -59.6 NC_005261.1 + 117040 0.74 0.324094
Target:  5'- aGCGUCCGCGGcCGCGcUCGcG-CCAg -3'
miRNA:   3'- aCGCAGGCGCC-GCGCuAGCaCaGGUg -5'
23575 3' -59.6 NC_005261.1 + 97613 0.73 0.331362
Target:  5'- cGUgGUCCGCGaccaGCGCGGcuUCGUGUCCGu -3'
miRNA:   3'- aCG-CAGGCGC----CGCGCU--AGCACAGGUg -5'
23575 3' -59.6 NC_005261.1 + 61082 0.73 0.346257
Target:  5'- cGCGgCgGCGGCGCGAgacgGUGUcCCACu -3'
miRNA:   3'- aCGCaGgCGCCGCGCUag--CACA-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 128949 0.73 0.353882
Target:  5'- uUGCgGUCCGCGGCGauggaCGAggUGUGcUCCGCg -3'
miRNA:   3'- -ACG-CAGGCGCCGC-----GCUa-GCAC-AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 136149 0.73 0.353882
Target:  5'- cGCGggaccuggccuUCCGCGGCGCGGUCGaGUaCCu- -3'
miRNA:   3'- aCGC-----------AGGCGCCGCGCUAGCaCA-GGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.