Results 1 - 20 of 294 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 123686 | 0.66 | 0.764805 |
Target: 5'- -aCGUCC-CGGCGCucagCGUGggCCGCg -3' miRNA: 3'- acGCAGGcGCCGCGcua-GCACa-GGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 85602 | 0.66 | 0.746053 |
Target: 5'- aGCGUCaCGgucaCGGUGCGcGUCGUGaggaagCCGCc -3' miRNA: 3'- aCGCAG-GC----GCCGCGC-UAGCACa-----GGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 55582 | 0.66 | 0.746053 |
Target: 5'- cGCaGUCCGCGGCGgCG-UCGc--CCAUg -3' miRNA: 3'- aCG-CAGGCGCCGC-GCuAGCacaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 115213 | 1.09 | 0.001322 |
Target: 5'- gUGCGUCCGCGGCGCGAUCGUGUCCACu -3' miRNA: 3'- -ACGCAGGCGCCGCGCUAGCACAGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 84327 | 0.66 | 0.764805 |
Target: 5'- cGCGUCCGgGGCcGCGcUCGcgcaCGCg -3' miRNA: 3'- aCGCAGGCgCCG-CGCuAGCacagGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 3438 | 0.66 | 0.764805 |
Target: 5'- aGCGUCCagGCGG-GCGcgCGggccgCCGCg -3' miRNA: 3'- aCGCAGG--CGCCgCGCuaGCaca--GGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 133834 | 0.66 | 0.755481 |
Target: 5'- cGCGgCCGCGuGCGCGc-CGUGgCCGg -3' miRNA: 3'- aCGCaGGCGC-CGCGCuaGCACaGGUg -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 57578 | 0.66 | 0.755481 |
Target: 5'- gGCG-CCGCGuugaGCGCG-UCGaUGUgCCACc -3' miRNA: 3'- aCGCaGGCGC----CGCGCuAGC-ACA-GGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 43156 | 0.66 | 0.755481 |
Target: 5'- cGCGccgccgacaUCGCGGCGCGAUaCGgcgCCGCc -3' miRNA: 3'- aCGCa--------GGCGCCGCGCUA-GCacaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 118842 | 0.66 | 0.746053 |
Target: 5'- cGC-UCUGCGGCGCGGagggCGgcgcGcCCGCg -3' miRNA: 3'- aCGcAGGCGCCGCGCUa---GCa---CaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 20578 | 0.66 | 0.755481 |
Target: 5'- gGCGcCgGCGGCGCGggUGgccuacGUCgACa -3' miRNA: 3'- aCGCaGgCGCCGCGCuaGCa-----CAGgUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 44252 | 0.66 | 0.755481 |
Target: 5'- cGCGgccgacgCCGCGGCGCGcgggggggCGggGcCCGCc -3' miRNA: 3'- aCGCa------GGCGCCGCGCua------GCa-CaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 85555 | 0.66 | 0.764805 |
Target: 5'- -cCGUCUGCGGCgccGCGAgguUCGgcgCCGCg -3' miRNA: 3'- acGCAGGCGCCG---CGCU---AGCacaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 13048 | 0.66 | 0.754543 |
Target: 5'- cGCGgggCCGCGcGCGCcccugccGggCGcGUCCGCc -3' miRNA: 3'- aCGCa--GGCGC-CGCG-------CuaGCaCAGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 21179 | 0.66 | 0.764805 |
Target: 5'- aUGCaG-CCGCuGGCGCGAgcgCGg--CCGCg -3' miRNA: 3'- -ACG-CaGGCG-CCGCGCUa--GCacaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 49250 | 0.66 | 0.755481 |
Target: 5'- cGcCG-CCGCGGCgGCG-UCGgcgcgcacGUCCGCg -3' miRNA: 3'- aC-GCaGGCGCCG-CGCuAGCa-------CAGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 133168 | 0.66 | 0.746053 |
Target: 5'- gGCGUcgccgccgacaaCCGCGGCGCcGUCGaggaGUUCAUc -3' miRNA: 3'- aCGCA------------GGCGCCGCGcUAGCa---CAGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 75602 | 0.66 | 0.746053 |
Target: 5'- cGCG-CCGCGGaCGCGGacggcgucgCGUacguggacgacGUCCACc -3' miRNA: 3'- aCGCaGGCGCC-GCGCUa--------GCA-----------CAGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 99014 | 0.66 | 0.764805 |
Target: 5'- cGCGagCgGCGGCGCGGcggcgCGcGcCCACa -3' miRNA: 3'- aCGCa-GgCGCCGCGCUa----GCaCaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 64315 | 0.66 | 0.755481 |
Target: 5'- cGCGU-CGCGGC-CGuagcCGUGcCCGCg -3' miRNA: 3'- aCGCAgGCGCCGcGCua--GCACaGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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