miRNA display CGI


Results 21 - 40 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 138069 0.66 0.736529
Target:  5'- gGCGgCgGCGGCaGCGGUCcugGUCCcGCg -3'
miRNA:   3'- aCGCaGgCGCCG-CGCUAGca-CAGG-UG- -5'
23575 3' -59.6 NC_005261.1 + 55582 0.66 0.746053
Target:  5'- cGCaGUCCGCGGCGgCG-UCGc--CCAUg -3'
miRNA:   3'- aCG-CAGGCGCCGC-GCuAGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 44252 0.66 0.755481
Target:  5'- cGCGgccgacgCCGCGGCGCGcgggggggCGggGcCCGCc -3'
miRNA:   3'- aCGCa------GGCGCCGCGCua------GCa-CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 99014 0.66 0.764805
Target:  5'- cGCGagCgGCGGCGCGGcggcgCGcGcCCACa -3'
miRNA:   3'- aCGCa-GgCGCCGCGCUa----GCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 121638 0.66 0.717229
Target:  5'- gGCGgccgccgCCgGCGaGCGCGggC-UGUCCGCg -3'
miRNA:   3'- aCGCa------GG-CGC-CGCGCuaGcACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 95206 0.66 0.726918
Target:  5'- cGCG-CCGCccgcccGCGCGGUgCGUGUuCCAg -3'
miRNA:   3'- aCGCaGGCGc-----CGCGCUA-GCACA-GGUg -5'
23575 3' -59.6 NC_005261.1 + 85602 0.66 0.746053
Target:  5'- aGCGUCaCGgucaCGGUGCGcGUCGUGaggaagCCGCc -3'
miRNA:   3'- aCGCAG-GC----GCCGCGC-UAGCACa-----GGUG- -5'
23575 3' -59.6 NC_005261.1 + 21179 0.66 0.764805
Target:  5'- aUGCaG-CCGCuGGCGCGAgcgCGg--CCGCg -3'
miRNA:   3'- -ACG-CaGGCG-CCGCGCUa--GCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 102650 0.66 0.730772
Target:  5'- cGCGgcccgcagcaccuccUCCGCGGCGCccagCGccgcGUCCGCc -3'
miRNA:   3'- aCGC---------------AGGCGCCGCGcua-GCa---CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 85555 0.66 0.764805
Target:  5'- -cCGUCUGCGGCgccGCGAgguUCGgcgCCGCg -3'
miRNA:   3'- acGCAGGCGCCG---CGCU---AGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 75602 0.66 0.746053
Target:  5'- cGCG-CCGCGGaCGCGGacggcgucgCGUacguggacgacGUCCACc -3'
miRNA:   3'- aCGCaGGCGCC-GCGCUa--------GCA-----------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 67661 0.66 0.736529
Target:  5'- -cCGUCCGCgcgcggcgccaGGCGCGGUgagcgCGUcaagaaGUCCACg -3'
miRNA:   3'- acGCAGGCG-----------CCGCGCUA-----GCA------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 13048 0.66 0.754543
Target:  5'- cGCGgggCCGCGcGCGCcccugccGggCGcGUCCGCc -3'
miRNA:   3'- aCGCa--GGCGC-CGCG-------CuaGCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 43156 0.66 0.755481
Target:  5'- cGCGccgccgacaUCGCGGCGCGAUaCGgcgCCGCc -3'
miRNA:   3'- aCGCa--------GGCGCCGCGCUA-GCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 133834 0.66 0.755481
Target:  5'- cGCGgCCGCGuGCGCGc-CGUGgCCGg -3'
miRNA:   3'- aCGCaGGCGC-CGCGCuaGCACaGGUg -5'
23575 3' -59.6 NC_005261.1 + 84327 0.66 0.764805
Target:  5'- cGCGUCCGgGGCcGCGcUCGcgcaCGCg -3'
miRNA:   3'- aCGCAGGCgCCG-CGCuAGCacagGUG- -5'
23575 3' -59.6 NC_005261.1 + 95904 0.67 0.70747
Target:  5'- cGCGcCCgcGCGGCGCGcucacUCGcgGUCCGa -3'
miRNA:   3'- aCGCaGG--CGCCGCGCu----AGCa-CAGGUg -5'
23575 3' -59.6 NC_005261.1 + 100513 0.66 0.717229
Target:  5'- gGCGUCCagguagccgcGCGGCGCcaGcgCGUcgaucuccgaGUCCGCc -3'
miRNA:   3'- aCGCAGG----------CGCCGCG--CuaGCA----------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 86608 0.66 0.726918
Target:  5'- gGCGUCgGCcGCGCcgcCGUcGUCCACc -3'
miRNA:   3'- aCGCAGgCGcCGCGcuaGCA-CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 47000 0.66 0.726918
Target:  5'- cGCG-CCGCGccgcCGCGAUgCGgcgGUCCAg -3'
miRNA:   3'- aCGCaGGCGCc---GCGCUA-GCa--CAGGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.