miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 12210 0.66 0.736529
Target:  5'- cGCGgccgCGCGGCGCGAUCaa--CUACg -3'
miRNA:   3'- aCGCag--GCGCCGCGCUAGcacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 12644 0.67 0.667908
Target:  5'- cGCGgucuggggCCGCgccGGCGCGAcaUCGUcGUCCuCg -3'
miRNA:   3'- aCGCa-------GGCG---CCGCGCU--AGCA-CAGGuG- -5'
23575 3' -59.6 NC_005261.1 + 12707 0.66 0.740349
Target:  5'- cUGCGg--GCGGCGCGAgCGUauaaaagccacuuggGUCUACa -3'
miRNA:   3'- -ACGCaggCGCCGCGCUaGCA---------------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 13048 0.66 0.754543
Target:  5'- cGCGgggCCGCGcGCGCcccugccGggCGcGUCCGCc -3'
miRNA:   3'- aCGCa--GGCGC-CGCG-------CuaGCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 13117 0.68 0.607882
Target:  5'- gGCGUCgGCGGcCGCGGggcgCGUGUg--- -3'
miRNA:   3'- aCGCAGgCGCC-GCGCUa---GCACAggug -5'
23575 3' -59.6 NC_005261.1 + 13963 0.66 0.764805
Target:  5'- cGCGgCCGgGcGCGCGggCGgcgCCGCg -3'
miRNA:   3'- aCGCaGGCgC-CGCGCuaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 14731 0.68 0.646927
Target:  5'- aGCGUCaCGaCGGUggcagggGCGAUCGgcgCCGCg -3'
miRNA:   3'- aCGCAG-GC-GCCG-------CGCUAGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 16053 0.67 0.69765
Target:  5'- gGCGUgaCG-GGCGCcAUCGUGgCCGCg -3'
miRNA:   3'- aCGCAg-GCgCCGCGcUAGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 17161 0.71 0.454233
Target:  5'- -cCGUcacCCGCGGCGCGggCGUGggcagcccugCCGCg -3'
miRNA:   3'- acGCA---GGCGCCGCGCuaGCACa---------GGUG- -5'
23575 3' -59.6 NC_005261.1 + 18684 0.67 0.677861
Target:  5'- uUGCGgccCCGCGGCGgGGccuugcUCGg--CCGCg -3'
miRNA:   3'- -ACGCa--GGCGCCGCgCU------AGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 18824 0.71 0.427684
Target:  5'- uUGCGcUCuCGUGcuCGCGcUCGUGUCCACa -3'
miRNA:   3'- -ACGC-AG-GCGCc-GCGCuAGCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 19185 0.72 0.410503
Target:  5'- cGCGgCCGCgGGCGCGuuaccGUCGgcgacGUCCGCu -3'
miRNA:   3'- aCGCaGGCG-CCGCGC-----UAGCa----CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 19496 0.66 0.755481
Target:  5'- gGUGcUCgGCGaGCGCGAcgcCGUGcCCGCc -3'
miRNA:   3'- aCGC-AGgCGC-CGCGCUa--GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 19641 0.66 0.764805
Target:  5'- cGCGagcUCCGCGGCggcgGCGcgCGccgCCGCg -3'
miRNA:   3'- aCGC---AGGCGCCG----CGCuaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 19806 0.69 0.549435
Target:  5'- gGCGUCCGCGGCgGCGAcagccagcgcggcugCGgcGcCCGCg -3'
miRNA:   3'- aCGCAGGCGCCG-CGCUa--------------GCa-CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 20091 0.67 0.661923
Target:  5'- aGCGUCUgcgcgagccggccgaGCGGCGCGAgccggCGgcgcagcGUCUGCg -3'
miRNA:   3'- aCGCAGG---------------CGCCGCGCUa----GCa------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 20106 0.67 0.69765
Target:  5'- gGCuUCCGCGGCaagGCGcgCGgGcCCGCa -3'
miRNA:   3'- aCGcAGGCGCCG---CGCuaGCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 20578 0.66 0.755481
Target:  5'- gGCGcCgGCGGCGCGggUGgccuacGUCgACa -3'
miRNA:   3'- aCGCaGgCGCCGCGCuaGCa-----CAGgUG- -5'
23575 3' -59.6 NC_005261.1 + 20605 0.68 0.597896
Target:  5'- cGCGggCC-CGGCGCGGUCGcuUCCGu -3'
miRNA:   3'- aCGCa-GGcGCCGCGCUAGCacAGGUg -5'
23575 3' -59.6 NC_005261.1 + 21179 0.66 0.764805
Target:  5'- aUGCaG-CCGCuGGCGCGAgcgCGg--CCGCg -3'
miRNA:   3'- -ACG-CaGGCG-CCGCGCUa--GCacaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.