miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 88648 0.66 0.726918
Target:  5'- aGCG-CCGCGcGCccCGAgccCGUGUUCACg -3'
miRNA:   3'- aCGCaGGCGC-CGc-GCUa--GCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 121076 0.66 0.717229
Target:  5'- cGCG-CCGCGG-GUGA-CG-GUCUACg -3'
miRNA:   3'- aCGCaGGCGCCgCGCUaGCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 69076 0.66 0.717229
Target:  5'- gGCG-CgGCGGCGCGGUgCGgguaGUUgGCg -3'
miRNA:   3'- aCGCaGgCGCCGCGCUA-GCa---CAGgUG- -5'
23575 3' -59.6 NC_005261.1 + 29490 0.66 0.726918
Target:  5'- cGCGgacgCCGCGGCGCcgcCGcugGcCCGCg -3'
miRNA:   3'- aCGCa---GGCGCCGCGcuaGCa--CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 33339 0.66 0.764805
Target:  5'- gGCGUCCgggcgcacGCGGCgGCGAUCGa---CGCu -3'
miRNA:   3'- aCGCAGG--------CGCCG-CGCUAGCacagGUG- -5'
23575 3' -59.6 NC_005261.1 + 134898 0.66 0.755481
Target:  5'- gGCG-CCGCGGCGCGGguggagGUGgaggaCAUg -3'
miRNA:   3'- aCGCaGGCGCCGCGCUag----CACag---GUG- -5'
23575 3' -59.6 NC_005261.1 + 32525 0.66 0.746053
Target:  5'- cGCGgcagacgUCGCuGGCGCugguGAUCGUGggcgCCAUg -3'
miRNA:   3'- aCGCa------GGCG-CCGCG----CUAGCACa---GGUG- -5'
23575 3' -59.6 NC_005261.1 + 11227 0.66 0.746053
Target:  5'- cGcCGcCUGCGGCGgGGUCGgccccugacgGUCCGu -3'
miRNA:   3'- aC-GCaGGCGCCGCgCUAGCa---------CAGGUg -5'
23575 3' -59.6 NC_005261.1 + 58653 0.66 0.755481
Target:  5'- aGCGcuacuUCCGCuucGGCGCGGacuaCGUGUaCUACg -3'
miRNA:   3'- aCGC-----AGGCG---CCGCGCUa---GCACA-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 61171 0.66 0.736529
Target:  5'- cGCGgcaCCGgccaGGCGCGGUCGccgagGgCCGCg -3'
miRNA:   3'- aCGCa--GGCg---CCGCGCUAGCa----CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 5861 0.66 0.746053
Target:  5'- aGCG-CCGCGaGCGCGGcgagCGcG-CCGCg -3'
miRNA:   3'- aCGCaGGCGC-CGCGCUa---GCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 136506 0.66 0.726918
Target:  5'- cGCGcaCCGCGGUGCc--CGUGccgCCGCg -3'
miRNA:   3'- aCGCa-GGCGCCGCGcuaGCACa--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 29746 0.66 0.746053
Target:  5'- aGCGU-CGCGGCGCG--CGUGcgcgCCGa -3'
miRNA:   3'- aCGCAgGCGCCGCGCuaGCACa---GGUg -5'
23575 3' -59.6 NC_005261.1 + 21179 0.66 0.764805
Target:  5'- aUGCaG-CCGCuGGCGCGAgcgCGg--CCGCg -3'
miRNA:   3'- -ACG-CaGGCG-CCGCGCUa--GCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 53204 0.66 0.746053
Target:  5'- cGUGgCCGgGGCGCGG-CGg--CCGCg -3'
miRNA:   3'- aCGCaGGCgCCGCGCUaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 85555 0.66 0.764805
Target:  5'- -cCGUCUGCGGCgccGCGAgguUCGgcgCCGCg -3'
miRNA:   3'- acGCAGGCGCCG---CGCU---AGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 19496 0.66 0.755481
Target:  5'- gGUGcUCgGCGaGCGCGAcgcCGUGcCCGCc -3'
miRNA:   3'- aCGC-AGgCGC-CGCGCUa--GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 89630 0.66 0.764805
Target:  5'- cGCGgCCGCGcaCGCGGUgagCGUGUUCAa -3'
miRNA:   3'- aCGCaGGCGCc-GCGCUA---GCACAGGUg -5'
23575 3' -59.6 NC_005261.1 + 105174 0.66 0.736529
Target:  5'- cGCGUCCcCGGCGCcgaGUCcUGgcccUCCGCg -3'
miRNA:   3'- aCGCAGGcGCCGCGc--UAGcAC----AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 90293 0.66 0.736529
Target:  5'- cGCGcucgCgCGCGGCGCGcgggaCGUGacggCCGCg -3'
miRNA:   3'- aCGCa---G-GCGCCGCGCua---GCACa---GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.