miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 58653 0.66 0.755481
Target:  5'- aGCGcuacuUCCGCuucGGCGCGGacuaCGUGUaCUACg -3'
miRNA:   3'- aCGC-----AGGCG---CCGCGCUa---GCACA-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 90434 0.66 0.736529
Target:  5'- gGCG-CUGCGcGCGCGgAUCGggcccuUCCGCu -3'
miRNA:   3'- aCGCaGGCGC-CGCGC-UAGCac----AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 104915 0.66 0.736529
Target:  5'- gGCGgCgGCGGCaGCGGUCcugGUCCcGCg -3'
miRNA:   3'- aCGCaGgCGCCG-CGCUAGca-CAGG-UG- -5'
23575 3' -59.6 NC_005261.1 + 105174 0.66 0.736529
Target:  5'- cGCGUCCcCGGCGCcgaGUCcUGgcccUCCGCg -3'
miRNA:   3'- aCGCAGGcGCCGCGc--UAGcAC----AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 5861 0.66 0.746053
Target:  5'- aGCG-CCGCGaGCGCGGcgagCGcG-CCGCg -3'
miRNA:   3'- aCGCaGGCGC-CGCGCUa---GCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 84327 0.66 0.764805
Target:  5'- cGCGUCCGgGGCcGCGcUCGcgcaCGCg -3'
miRNA:   3'- aCGCAGGCgCCG-CGCuAGCacagGUG- -5'
23575 3' -59.6 NC_005261.1 + 57578 0.66 0.755481
Target:  5'- gGCG-CCGCGuugaGCGCG-UCGaUGUgCCACc -3'
miRNA:   3'- aCGCaGGCGC----CGCGCuAGC-ACA-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 138069 0.66 0.736529
Target:  5'- gGCGgCgGCGGCaGCGGUCcugGUCCcGCg -3'
miRNA:   3'- aCGCaGgCGCCG-CGCUAGca-CAGG-UG- -5'
23575 3' -59.6 NC_005261.1 + 657 0.66 0.736529
Target:  5'- cGCGUCCcCGGCGCcgaGUCcUGgcccUCCGCg -3'
miRNA:   3'- aCGCAGGcGCCGCGc--UAGcAC----AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 91127 0.66 0.736529
Target:  5'- cGCG-CCGCGGC-CGAggccucagcCGUG-CCGCc -3'
miRNA:   3'- aCGCaGGCGCCGcGCUa--------GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 75602 0.66 0.746053
Target:  5'- cGCG-CCGCGGaCGCGGacggcgucgCGUacguggacgacGUCCACc -3'
miRNA:   3'- aCGCaGGCGCC-GCGCUa--------GCA-----------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 55582 0.66 0.746053
Target:  5'- cGCaGUCCGCGGCGgCG-UCGc--CCAUg -3'
miRNA:   3'- aCG-CAGGCGCCGC-GCuAGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 79807 0.66 0.740349
Target:  5'- gGCGUCCcccaacaugcgcgcgGCGGCGCGG-CGg--CCAg -3'
miRNA:   3'- aCGCAGG---------------CGCCGCGCUaGCacaGGUg -5'
23575 3' -59.6 NC_005261.1 + 64315 0.66 0.755481
Target:  5'- cGCGU-CGCGGC-CGuagcCGUGcCCGCg -3'
miRNA:   3'- aCGCAgGCGCCGcGCua--GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 30381 0.66 0.755481
Target:  5'- gGCG-CCGCGGCGCGGguggagGUGgaggaCAUg -3'
miRNA:   3'- aCGCaGGCGCCGCGCUag----CACag---GUG- -5'
23575 3' -59.6 NC_005261.1 + 118842 0.66 0.746053
Target:  5'- cGC-UCUGCGGCGCGGagggCGgcgcGcCCGCg -3'
miRNA:   3'- aCGcAGGCGCCGCGCUa---GCa---CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 3438 0.66 0.764805
Target:  5'- aGCGUCCagGCGG-GCGcgCGggccgCCGCg -3'
miRNA:   3'- aCGCAGG--CGCCgCGCuaGCaca--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 20578 0.66 0.755481
Target:  5'- gGCGcCgGCGGCGCGggUGgccuacGUCgACa -3'
miRNA:   3'- aCGCaGgCGCCGCGCuaGCa-----CAGgUG- -5'
23575 3' -59.6 NC_005261.1 + 21179 0.66 0.764805
Target:  5'- aUGCaG-CCGCuGGCGCGAgcgCGg--CCGCg -3'
miRNA:   3'- -ACG-CaGGCG-CCGCGCUa--GCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 12210 0.66 0.736529
Target:  5'- cGCGgccgCGCGGCGCGAUCaa--CUACg -3'
miRNA:   3'- aCGCag--GCGCCGCGCUAGcacaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.