miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 105223 0.73 0.346257
Target:  5'- cGCGggCCGCGGcCGCGGcCGUGaUCUGCg -3'
miRNA:   3'- aCGCa-GGCGCC-GCGCUaGCAC-AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 136149 0.73 0.353882
Target:  5'- cGCGggaccuggccuUCCGCGGCGCGGUCGaGUaCCu- -3'
miRNA:   3'- aCGC-----------AGGCGCCGCGCUAGCaCA-GGug -5'
23575 3' -59.6 NC_005261.1 + 128949 0.73 0.353882
Target:  5'- uUGCgGUCCGCGGCGauggaCGAggUGUGcUCCGCg -3'
miRNA:   3'- -ACG-CAGGCGCCGC-----GCUa-GCAC-AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 24432 0.73 0.353882
Target:  5'- uUGCgGUCCGCGGCGauggaCGAggUGUGcUCCGCg -3'
miRNA:   3'- -ACG-CAGGCGCCGC-----GCUa-GCAC-AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 31632 0.73 0.353882
Target:  5'- cGCGggaccuggccuUCCGCGGCGCGGUCGaGUaCCu- -3'
miRNA:   3'- aCGC-----------AGGCGCCGCGCUAGCaCA-GGug -5'
23575 3' -59.6 NC_005261.1 + 131184 0.73 0.369485
Target:  5'- aGCGgcuacgcCCGCGGCGCGGUCGccgCCGg -3'
miRNA:   3'- aCGCa------GGCGCCGCGCUAGCacaGGUg -5'
23575 3' -59.6 NC_005261.1 + 70055 0.72 0.377461
Target:  5'- gGgGcCCGCGGCGCGcgCGaGcUCCGCg -3'
miRNA:   3'- aCgCaGGCGCCGCGCuaGCaC-AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 60181 0.72 0.385552
Target:  5'- cGCGUCUGCGcCGCGG-CGgagaaGUCCGCg -3'
miRNA:   3'- aCGCAGGCGCcGCGCUaGCa----CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 5650 0.72 0.385552
Target:  5'- gGCGUCCGCgGGCGCGccgaCGUcUUCGCa -3'
miRNA:   3'- aCGCAGGCG-CCGCGCua--GCAcAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 115037 0.72 0.393757
Target:  5'- cUGCGggccCCGCGGCGCGcUCGcUGUCg-- -3'
miRNA:   3'- -ACGCa---GGCGCCGCGCuAGC-ACAGgug -5'
23575 3' -59.6 NC_005261.1 + 10520 0.72 0.393757
Target:  5'- cUGCGggccCCGCGGCGCGcUCGcUGUCg-- -3'
miRNA:   3'- -ACGCa---GGCGCCGCGCuAGC-ACAGgug -5'
23575 3' -59.6 NC_005261.1 + 46255 0.72 0.402075
Target:  5'- cGCGgCgGCGGcCGCGAcCGUGUCCcCg -3'
miRNA:   3'- aCGCaGgCGCC-GCGCUaGCACAGGuG- -5'
23575 3' -59.6 NC_005261.1 + 122967 0.72 0.402075
Target:  5'- gGCGgcgCCGcCGGgGCGAUCGcgGcCCACu -3'
miRNA:   3'- aCGCa--GGC-GCCgCGCUAGCa-CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 100950 0.72 0.410503
Target:  5'- cGCGUCCaCGGCGCGcgCG-GUCUc- -3'
miRNA:   3'- aCGCAGGcGCCGCGCuaGCaCAGGug -5'
23575 3' -59.6 NC_005261.1 + 19185 0.72 0.410503
Target:  5'- cGCGgCCGCgGGCGCGuuaccGUCGgcgacGUCCGCu -3'
miRNA:   3'- aCGCaGGCG-CCGCGC-----UAGCa----CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 68127 0.72 0.41904
Target:  5'- cGCGggCCGCGGCGCGG-CGa--CCGCg -3'
miRNA:   3'- aCGCa-GGCGCCGCGCUaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 119575 0.72 0.41904
Target:  5'- aUGCG-CUGCGaGCGCGAgacCGUGgCCGCc -3'
miRNA:   3'- -ACGCaGGCGC-CGCGCUa--GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 70641 0.72 0.41904
Target:  5'- aGCG-CCGCGGCGCuGAgguUCGgcgCCGCg -3'
miRNA:   3'- aCGCaGGCGCCGCG-CU---AGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 79237 0.71 0.425947
Target:  5'- gGCGcCCGCGGCGCccagcacaacCGUGcCCACu -3'
miRNA:   3'- aCGCaGGCGCCGCGcua-------GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 18824 0.71 0.427684
Target:  5'- uUGCGcUCuCGUGcuCGCGcUCGUGUCCACa -3'
miRNA:   3'- -ACGC-AG-GCGCc-GCGCuAGCACAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.