miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 31632 0.73 0.353882
Target:  5'- cGCGggaccuggccuUCCGCGGCGCGGUCGaGUaCCu- -3'
miRNA:   3'- aCGC-----------AGGCGCCGCGCUAGCaCA-GGug -5'
23575 3' -59.6 NC_005261.1 + 31673 0.75 0.282987
Target:  5'- cUGCGgcuggCCGCGGCGCGGcggcggcugaUCGUGaUCgACg -3'
miRNA:   3'- -ACGCa----GGCGCCGCGCU----------AGCAC-AGgUG- -5'
23575 3' -59.6 NC_005261.1 + 31783 0.66 0.726918
Target:  5'- cGCGgugcugcCCGCGGCGCa---GUGcgCCGCg -3'
miRNA:   3'- aCGCa------GGCGCCGCGcuagCACa-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 31988 0.66 0.726918
Target:  5'- cGCGcaCCGCGGUGCc--CGUGccgCCGCg -3'
miRNA:   3'- aCGCa-GGCGCCGCGcuaGCACa--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 32322 0.68 0.627899
Target:  5'- cGCGgCCGCGGCGCccggCGUGgCCu- -3'
miRNA:   3'- aCGCaGGCGCCGCGcua-GCACaGGug -5'
23575 3' -59.6 NC_005261.1 + 32525 0.66 0.746053
Target:  5'- cGCGgcagacgUCGCuGGCGCugguGAUCGUGggcgCCAUg -3'
miRNA:   3'- aCGCa------GGCG-CCGCG----CUAGCACa---GGUG- -5'
23575 3' -59.6 NC_005261.1 + 32540 0.67 0.671893
Target:  5'- gGCcccggCCGCGGCGCGGgccggcgcgCGUggaagugcucuccucGUCCGCg -3'
miRNA:   3'- aCGca---GGCGCCGCGCUa--------GCA---------------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 32754 0.66 0.740349
Target:  5'- gGgGcCCGCGcGCcccgaggagcugaggGCGGcCGUGUCCGCg -3'
miRNA:   3'- aCgCaGGCGC-CG---------------CGCUaGCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 33339 0.66 0.764805
Target:  5'- gGCGUCCgggcgcacGCGGCgGCGAUCGa---CGCu -3'
miRNA:   3'- aCGCAGG--------CGCCG-CGCUAGCacagGUG- -5'
23575 3' -59.6 NC_005261.1 + 33921 0.68 0.617885
Target:  5'- cGCGUCCGCGcgucuuugaGCGCGcgCGggccugcgagGcCCGCg -3'
miRNA:   3'- aCGCAGGCGC---------CGCGCuaGCa---------CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 34789 0.68 0.617885
Target:  5'- gGCGgccgaCCGCGaggcgcGCGCGcgCGUGgCCGCg -3'
miRNA:   3'- aCGCa----GGCGC------CGCGCuaGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 34849 0.68 0.597896
Target:  5'- gGCGgCCGCGGCGCGG-CGg--CgCGCg -3'
miRNA:   3'- aCGCaGGCGCCGCGCUaGCacaG-GUG- -5'
23575 3' -59.6 NC_005261.1 + 35451 0.7 0.499425
Target:  5'- cGCGgCCGUgggcgaggccucgGGCGCGcUCGcGUCCGCg -3'
miRNA:   3'- aCGCaGGCG-------------CCGCGCuAGCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 35455 0.68 0.617885
Target:  5'- cGgGUCuaggCGCGGCGCGcgCGcGUCC-Cg -3'
miRNA:   3'- aCgCAG----GCGCCGCGCuaGCaCAGGuG- -5'
23575 3' -59.6 NC_005261.1 + 35925 0.67 0.677861
Target:  5'- cGCG-CCGCGGCGCG--CGg--CUACg -3'
miRNA:   3'- aCGCaGGCGCCGCGCuaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 36608 0.67 0.70747
Target:  5'- cGCGgCCGCGGCGCGAgaggCGcuagaggCgGCa -3'
miRNA:   3'- aCGCaGGCGCCGCGCUa---GCaca----GgUG- -5'
23575 3' -59.6 NC_005261.1 + 37499 0.68 0.607882
Target:  5'- cGCGccgCCGCGcGCGCGcgCGgcgcggCCGCg -3'
miRNA:   3'- aCGCa--GGCGC-CGCGCuaGCaca---GGUG- -5'
23575 3' -59.6 NC_005261.1 + 38368 0.66 0.726918
Target:  5'- aGCGgCgGCGGCGCGcggCGgccgGUgCCGCu -3'
miRNA:   3'- aCGCaGgCGCCGCGCua-GCa---CA-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 41029 0.67 0.677861
Target:  5'- aGCGUggCCGCGGCGCuucCGg--CCGCg -3'
miRNA:   3'- aCGCA--GGCGCCGCGcuaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 41107 0.67 0.677861
Target:  5'- aGCGUggCCGCGGCGCcucCGg--CCGCg -3'
miRNA:   3'- aCGCA--GGCGCCGCGcuaGCacaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.