miRNA display CGI


Results 81 - 100 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 21700 0.66 0.877119
Target:  5'- gUCGCGGGCgaGCGCUUCAcggaggacuGCuucgaGCCGa -3'
miRNA:   3'- -AGUGCUUGaaCGCGAGGU---------CGug---CGGC- -5'
23575 5' -55.7 NC_005261.1 + 21743 0.67 0.869774
Target:  5'- aCACGcGGCUgcUGCGC-CUggagcGCGCGCCGg -3'
miRNA:   3'- aGUGC-UUGA--ACGCGaGGu----CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 22145 0.68 0.821364
Target:  5'- gUCGCGGACcgcgGCauccacggGgaCCGGCGCGCCa -3'
miRNA:   3'- -AGUGCUUGaa--CG--------CgaGGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 22686 0.68 0.785492
Target:  5'- aCACGGACcUGCa--CCAGC-CGCCGa -3'
miRNA:   3'- aGUGCUUGaACGcgaGGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 23648 0.7 0.727662
Target:  5'- cUCGCGGaacaGCUUGCGaacgcgaUCCGGCGgcggccgcucccCGCCGa -3'
miRNA:   3'- -AGUGCU----UGAACGCg------AGGUCGU------------GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 23759 0.67 0.869774
Target:  5'- -gGCGGGCUUGCcC-CgGGCGgGCCGg -3'
miRNA:   3'- agUGCUUGAACGcGaGgUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 23816 0.67 0.869774
Target:  5'- -gGCGGGCUUGCcC-CgGGCGgGCCGg -3'
miRNA:   3'- agUGCUUGAACGcGaGgUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 23873 0.67 0.869774
Target:  5'- -gGCGGGCUUGCcC-CgGGCGgGCCGg -3'
miRNA:   3'- agUGCUUGAACGcGaGgUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 24138 0.68 0.794693
Target:  5'- aCGCGAACagaaaGCGguaaaaCUCCAGCucgGCGCCGc -3'
miRNA:   3'- aGUGCUUGaa---CGC------GAGGUCG---UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 24556 0.68 0.829915
Target:  5'- cCACGAACgggGCGCggUCGGCGCagagGUCGa -3'
miRNA:   3'- aGUGCUUGaa-CGCGa-GGUCGUG----CGGC- -5'
23575 5' -55.7 NC_005261.1 + 24661 0.69 0.751272
Target:  5'- gCGCGGcggccaccgaccacuGCUcGCGgUCCAGCGCGCg- -3'
miRNA:   3'- aGUGCU---------------UGAaCGCgAGGUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 24993 0.67 0.839109
Target:  5'- gCGCGAACUugcUGCGCgcaaaguccucgaaCGGCGCGCa- -3'
miRNA:   3'- aGUGCUUGA---ACGCGag------------GUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 25071 0.66 0.900398
Target:  5'- cCAgGAGCagGCGCUCggcgaucuccacguuCAGC-CGCCGc -3'
miRNA:   3'- aGUgCUUGaaCGCGAG---------------GUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 25181 0.66 0.910415
Target:  5'- -aGCGAGCggugGCGCgCCAcgccGCGCGCgGc -3'
miRNA:   3'- agUGCUUGaa--CGCGaGGU----CGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 27547 0.66 0.897799
Target:  5'- gCGCGGAagccCUcGUGCUCCAG-GCGCUGc -3'
miRNA:   3'- aGUGCUU----GAaCGCGAGGUCgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 27596 0.71 0.635867
Target:  5'- aCACGAACUUuacgccggcGgGCUCCAGC-CGCa- -3'
miRNA:   3'- aGUGCUUGAA---------CgCGAGGUCGuGCGgc -5'
23575 5' -55.7 NC_005261.1 + 27644 0.66 0.904226
Target:  5'- cCAgGAAC--GCGCaggCCGGCACGUgGg -3'
miRNA:   3'- aGUgCUUGaaCGCGa--GGUCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 28585 0.66 0.877119
Target:  5'- gCGCGAGCgccgGCGggCCGccCGCGCCGa -3'
miRNA:   3'- aGUGCUUGaa--CGCgaGGUc-GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 28743 0.76 0.385404
Target:  5'- gCGCGGGCcccggccauUUGCGCUCgGGCGCGCaCGc -3'
miRNA:   3'- aGUGCUUG---------AACGCGAGgUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 28782 0.66 0.904226
Target:  5'- cCGCGGcGCggGCGCUCgCGGcCGCGgCGg -3'
miRNA:   3'- aGUGCU-UGaaCGCGAG-GUC-GUGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.