miRNA display CGI


Results 61 - 80 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 17140 0.66 0.910415
Target:  5'- gCACGGcCUggagGCGCUggCGGC-CGCCGg -3'
miRNA:   3'- aGUGCUuGAa---CGCGAg-GUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 17201 0.67 0.84646
Target:  5'- -gGCGAGCagcGCGC-CCAGCacggacagcaGCGCCa -3'
miRNA:   3'- agUGCUUGaa-CGCGaGGUCG----------UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 18235 0.67 0.862212
Target:  5'- cCGCGuAGCcgGCGCccUCCAGCGuCgGCCGg -3'
miRNA:   3'- aGUGC-UUGaaCGCG--AGGUCGU-G-CGGC- -5'
23575 5' -55.7 NC_005261.1 + 18306 0.7 0.727662
Target:  5'- gUCACGAcCUUGCGCUgCgacuuGGCGC-CCGc -3'
miRNA:   3'- -AGUGCUuGAACGCGAgG-----UCGUGcGGC- -5'
23575 5' -55.7 NC_005261.1 + 18568 0.7 0.697485
Target:  5'- gCugGAACcagaGCUCCAggcGCGCGCCGc -3'
miRNA:   3'- aGugCUUGaacgCGAGGU---CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 18655 0.66 0.897799
Target:  5'- cCACGGuCUcGCGCUCgCAGCGCauccacuugcgGCCc -3'
miRNA:   3'- aGUGCUuGAaCGCGAG-GUCGUG-----------CGGc -5'
23575 5' -55.7 NC_005261.1 + 19063 0.66 0.897799
Target:  5'- gUACGGGCUgcGCgGCUCuCGGCGCGUg- -3'
miRNA:   3'- aGUGCUUGAa-CG-CGAG-GUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 19240 0.7 0.707612
Target:  5'- cCGCGAgACUgcggggGCGCUgaaCAGCGCGCgCGg -3'
miRNA:   3'- aGUGCU-UGAa-----CGCGAg--GUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 19293 0.68 0.794693
Target:  5'- aCGCGAcgACgcccGCGCUCCA-CACGuCCGu -3'
miRNA:   3'- aGUGCU--UGaa--CGCGAGGUcGUGC-GGC- -5'
23575 5' -55.7 NC_005261.1 + 19429 0.68 0.785492
Target:  5'- gCGCaGACgcccacgUGCGCcaUCAGCGCGCCGu -3'
miRNA:   3'- aGUGcUUGa------ACGCGa-GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 19676 0.68 0.803744
Target:  5'- gCGCGGGCacgGCG-UCCucgcGCGCGCCGc -3'
miRNA:   3'- aGUGCUUGaa-CGCgAGGu---CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 19962 0.8 0.236561
Target:  5'- gUCACGAAg-UGCGCgcagugcaCCGGCACGCCGc -3'
miRNA:   3'- -AGUGCUUgaACGCGa-------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 20135 0.67 0.862212
Target:  5'- -aGCGGcuccGCgaGCGCUCaGGcCGCGCCGg -3'
miRNA:   3'- agUGCU----UGaaCGCGAGgUC-GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 20202 0.68 0.829915
Target:  5'- gUCGCGGccgggccccGCgUGCGUccgacagcgUCCAGCGcCGCCGc -3'
miRNA:   3'- -AGUGCU---------UGaACGCG---------AGGUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 20512 0.78 0.307613
Target:  5'- gCGCGGccGCUUGCGggCCcGCGCGCCGg -3'
miRNA:   3'- aGUGCU--UGAACGCgaGGuCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 20843 0.66 0.900398
Target:  5'- uUCGCGGGggcagcguggcggcuCUUGCGCcgcgggCCGGCcauCGCCa -3'
miRNA:   3'- -AGUGCUU---------------GAACGCGa-----GGUCGu--GCGGc -5'
23575 5' -55.7 NC_005261.1 + 20903 0.66 0.910415
Target:  5'- gCGCGGGCaaggaUGCGCUUgCuGCccGCGCCGg -3'
miRNA:   3'- aGUGCUUGa----ACGCGAG-GuCG--UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 21009 0.73 0.504042
Target:  5'- -gGCGGACUcgGCGC-CCaggcagcgGGCGCGCCGg -3'
miRNA:   3'- agUGCUUGAa-CGCGaGG--------UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 21159 0.68 0.829915
Target:  5'- cUCGcCGAGCUcGUGCUUaaccaGGCugGCCu -3'
miRNA:   3'- -AGU-GCUUGAaCGCGAGg----UCGugCGGc -5'
23575 5' -55.7 NC_005261.1 + 21389 0.68 0.829915
Target:  5'- gCGCGGuccACUuugagUGCGUUCCcGCgccGCGCCGg -3'
miRNA:   3'- aGUGCU---UGA-----ACGCGAGGuCG---UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.