miRNA display CGI


Results 61 - 80 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 7706 0.73 0.523733
Target:  5'- -gACGAGCgggcGCGCUUCGGCcaGCGCCu -3'
miRNA:   3'- agUGCUUGaa--CGCGAGGUCG--UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 108703 0.73 0.523733
Target:  5'- cCGCGAGCUUcGCGCUCUgcAGcCAgGCCa -3'
miRNA:   3'- aGUGCUUGAA-CGCGAGG--UC-GUgCGGc -5'
23575 5' -55.7 NC_005261.1 + 77300 0.73 0.530695
Target:  5'- gUCGCGAGCggacGCGCacgCCAGCcggagcuuccgccgGCGCCGc -3'
miRNA:   3'- -AGUGCUUGaa--CGCGa--GGUCG--------------UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 65531 0.73 0.533688
Target:  5'- gCGCGAcGCUgGCGgaCCuGGCGCGCCGg -3'
miRNA:   3'- aGUGCU-UGAaCGCgaGG-UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 74740 0.73 0.533688
Target:  5'- cCGCGGACaaccugcugGCGCggCAGCGCGCCa -3'
miRNA:   3'- aGUGCUUGaa-------CGCGagGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 88091 0.73 0.533688
Target:  5'- -uGCGAACggggcgagGCGCcCCcGCGCGCCGg -3'
miRNA:   3'- agUGCUUGaa------CGCGaGGuCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 70926 0.73 0.543711
Target:  5'- gCGCGAGCUccagcgccUGCGCguccgCCGGgaACGCCGa -3'
miRNA:   3'- aGUGCUUGA--------ACGCGa----GGUCg-UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 51902 0.73 0.543711
Target:  5'- aCAUGGAC--GCGCUgaaguacguggCCAGCACGCUGg -3'
miRNA:   3'- aGUGCUUGaaCGCGA-----------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 93352 0.73 0.543711
Target:  5'- gCGCGcGCa-GCGCgcgCCAGUGCGCCGg -3'
miRNA:   3'- aGUGCuUGaaCGCGa--GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 99114 0.73 0.553793
Target:  5'- cUCGCGAucaGCgccgagaGCuGCUCCAGCuGCGCCGu -3'
miRNA:   3'- -AGUGCU---UGaa-----CG-CGAGGUCG-UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 54234 0.73 0.553793
Target:  5'- gUCACGcGGCgcGCGCUCaugugCAGCGCGCCc -3'
miRNA:   3'- -AGUGC-UUGaaCGCGAG-----GUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 100344 0.73 0.553793
Target:  5'- gCAUGGccaGCUcGgGCUCCAGCACGCg- -3'
miRNA:   3'- aGUGCU---UGAaCgCGAGGUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 60140 0.73 0.553793
Target:  5'- aCACGGGCUcccagGCGCUgCAG-GCGCCGc -3'
miRNA:   3'- aGUGCUUGAa----CGCGAgGUCgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 99643 0.72 0.563931
Target:  5'- cCGgGAugcACaUGCGCgCCAGCACGCUGa -3'
miRNA:   3'- aGUgCU---UGaACGCGaGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 79078 0.72 0.563931
Target:  5'- -gGCGGGCgccGCGCgCCcggGGCGCGCCGg -3'
miRNA:   3'- agUGCUUGaa-CGCGaGG---UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 115176 0.72 0.563931
Target:  5'- gCGCGAuggGCacGCGCUUCAGCACgGCCc -3'
miRNA:   3'- aGUGCU---UGaaCGCGAGGUCGUG-CGGc -5'
23575 5' -55.7 NC_005261.1 + 90552 0.72 0.573097
Target:  5'- cCGCGGgcggccgugcugcGCUcgGCGCUgCGGCugGCCGu -3'
miRNA:   3'- aGUGCU-------------UGAa-CGCGAgGUCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 81580 0.72 0.574117
Target:  5'- uUCugGAAga---GCUCCAGCGCGCCc -3'
miRNA:   3'- -AGugCUUgaacgCGAGGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 56938 0.72 0.574117
Target:  5'- gCACGGACgugcgcgccGCGCUCCGGCucGCGCa- -3'
miRNA:   3'- aGUGCUUGaa-------CGCGAGGUCG--UGCGgc -5'
23575 5' -55.7 NC_005261.1 + 49745 0.72 0.574117
Target:  5'- --uCGAGCgcggcGCGCUCCGGCGCGgCa -3'
miRNA:   3'- aguGCUUGaa---CGCGAGGUCGUGCgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.