miRNA display CGI


Results 61 - 80 of 597 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 93251 0.66 0.897799
Target:  5'- gUCGCcuucGACcgGCGCgCCAGCGCGCg- -3'
miRNA:   3'- -AGUGc---UUGaaCGCGaGGUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 70813 0.66 0.897799
Target:  5'- cCGCGccGGCggccccggGCGCgCCGGCGCGCgCGu -3'
miRNA:   3'- aGUGC--UUGaa------CGCGaGGUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 19063 0.66 0.897799
Target:  5'- gUACGGGCUgcGCgGCUCuCGGCGCGUg- -3'
miRNA:   3'- aGUGCUUGAa-CG-CGAG-GUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 70776 0.66 0.897799
Target:  5'- aCGCGGGCgugcggGCGgaCCGGCugcccuuuggGCGCUGg -3'
miRNA:   3'- aGUGCUUGaa----CGCgaGGUCG----------UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 81496 0.66 0.897799
Target:  5'- cCGCG-GCUaGCGCggCGcGCGCGCCGc -3'
miRNA:   3'- aGUGCuUGAaCGCGagGU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 80192 0.66 0.897799
Target:  5'- aUCACGcGGCc-GCGCUCCcuggAGCugcCGCCGc -3'
miRNA:   3'- -AGUGC-UUGaaCGCGAGG----UCGu--GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 71362 0.66 0.897799
Target:  5'- cCugGAGCUUGgGCUCUcgguGGCGUGCg- -3'
miRNA:   3'- aGugCUUGAACgCGAGG----UCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 118105 0.66 0.897799
Target:  5'- cUCGCgGAGCcgcUGCGggCCcGCGCGCCu -3'
miRNA:   3'- -AGUG-CUUGa--ACGCgaGGuCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 41630 0.66 0.897799
Target:  5'- cCACGcGCgacGUGCUgCGGCagaGCGCCGc -3'
miRNA:   3'- aGUGCuUGaa-CGCGAgGUCG---UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 27547 0.66 0.897799
Target:  5'- gCGCGGAagccCUcGUGCUCCAG-GCGCUGc -3'
miRNA:   3'- aGUGCUU----GAaCGCGAGGUCgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 121342 0.66 0.897799
Target:  5'- ---aGAGCgggUGCGC-CCGGC-CGCUGu -3'
miRNA:   3'- agugCUUGa--ACGCGaGGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 18655 0.66 0.897799
Target:  5'- cCACGGuCUcGCGCUCgCAGCGCauccacuugcgGCCc -3'
miRNA:   3'- aGUGCUuGAaCGCGAG-GUCGUG-----------CGGc -5'
23575 5' -55.7 NC_005261.1 + 52014 0.66 0.897799
Target:  5'- gCACcGGCUgcccCGgUUCGGCGCGCCGa -3'
miRNA:   3'- aGUGcUUGAac--GCgAGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 61433 0.66 0.897799
Target:  5'- aCAgGAagcGCUcGCGCggcgCCAGCgcgggggcguccGCGCCGa -3'
miRNA:   3'- aGUgCU---UGAaCGCGa---GGUCG------------UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 101798 0.66 0.893829
Target:  5'- -gGCGGGgcUGCGCacguacgucaccuccUCCAGCGCGCgGc -3'
miRNA:   3'- agUGCUUgaACGCG---------------AGGUCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 105945 0.66 0.893829
Target:  5'- cCGCGAGCgcgccgucgauggccUcgGCGC-CCAGCGCGgCGu -3'
miRNA:   3'- aGUGCUUG---------------Aa-CGCGaGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 82372 0.66 0.891136
Target:  5'- gUCGUGGACUUGgucCGCgCCGGCGCGgaCCGg -3'
miRNA:   3'- -AGUGCUUGAAC---GCGaGGUCGUGC--GGC- -5'
23575 5' -55.7 NC_005261.1 + 13961 0.66 0.891136
Target:  5'- gUCGCGGcCggGCGCgCgGGCGgCGCCGc -3'
miRNA:   3'- -AGUGCUuGaaCGCGaGgUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 31254 0.66 0.891136
Target:  5'- aCGCGG---UGCGCggCGcGCGCGCCGa -3'
miRNA:   3'- aGUGCUugaACGCGagGU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 83146 0.66 0.891136
Target:  5'- gUCGCGGACgcgagucUGCGCaugccUUCGGCG-GCCGa -3'
miRNA:   3'- -AGUGCUUGa------ACGCG-----AGGUCGUgCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.