miRNA display CGI


Results 81 - 100 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 133258 0.66 0.891136
Target:  5'- cCGCaGGCggcGCGCgaguaCCAGgGCGCCGg -3'
miRNA:   3'- aGUGcUUGaa-CGCGa----GGUCgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 16057 0.66 0.891136
Target:  5'- -aGCGGGCccGCGCcgagCCGGCGCGUg- -3'
miRNA:   3'- agUGCUUGaaCGCGa---GGUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 107164 0.66 0.891136
Target:  5'- aCGCGGGCgggcagcgGCgGCUCCcGCcGCGCUGg -3'
miRNA:   3'- aGUGCUUGaa------CG-CGAGGuCG-UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 81448 0.66 0.891136
Target:  5'- cCGCG-GCggGCGCcgCCAGCagcagggcccACGCCGc -3'
miRNA:   3'- aGUGCuUGaaCGCGa-GGUCG----------UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 73457 0.66 0.891136
Target:  5'- gCACGucgugGCGCgccgCgAGCugGCCGa -3'
miRNA:   3'- aGUGCuugaaCGCGa---GgUCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 2647 0.66 0.891136
Target:  5'- aCGCGGGCgggcagcgGCgGCUCCcGCcGCGCUGg -3'
miRNA:   3'- aGUGCUUGaa------CG-CGAGGuCG-UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 82372 0.66 0.891136
Target:  5'- gUCGUGGACUUGgucCGCgCCGGCGCGgaCCGg -3'
miRNA:   3'- -AGUGCUUGAAC---GCGaGGUCGUGC--GGC- -5'
23575 5' -55.7 NC_005261.1 + 51392 0.66 0.891136
Target:  5'- gCGCGAACUccGCGagcggagCCcGCGCGCCc -3'
miRNA:   3'- aGUGCUUGAa-CGCga-----GGuCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 13961 0.66 0.891136
Target:  5'- gUCGCGGcCggGCGCgCgGGCGgCGCCGc -3'
miRNA:   3'- -AGUGCUuGaaCGCGaGgUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 81722 0.66 0.891136
Target:  5'- aCGCGGccACUUGCGCaaacgcgCCugaGGCGCGCa- -3'
miRNA:   3'- aGUGCU--UGAACGCGa------GG---UCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 83146 0.66 0.891136
Target:  5'- gUCGCGGACgcgagucUGCGCaugccUUCGGCG-GCCGa -3'
miRNA:   3'- -AGUGCUUGa------ACGCG-----AGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 119248 0.66 0.890457
Target:  5'- aUCGCGGccauCUUcgcaugcGCGCUCCuGCuCGCUGg -3'
miRNA:   3'- -AGUGCUu---GAA-------CGCGAGGuCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 135406 0.66 0.887027
Target:  5'- cCGCGAccuCUaccgcauguucgaggUGCGCUC--GCACGCCGc -3'
miRNA:   3'- aGUGCUu--GA---------------ACGCGAGguCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 70817 0.66 0.884241
Target:  5'- cCGCGGGCgcugcuggcgGCGCUggucCUGGCGCGCgCGg -3'
miRNA:   3'- aGUGCUUGaa--------CGCGA----GGUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 79271 0.66 0.884241
Target:  5'- aCGCGGGCgccgagGCGCU---GCugGCCGa -3'
miRNA:   3'- aGUGCUUGaa----CGCGAgguCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 122449 0.66 0.884241
Target:  5'- gCGCGGGCg-GCGCccgCCAGCG-GCCu -3'
miRNA:   3'- aGUGCUUGaaCGCGa--GGUCGUgCGGc -5'
23575 5' -55.7 NC_005261.1 + 136382 0.66 0.884241
Target:  5'- gUCuuCGGGCccgGCGcCUUCGcGCGCGCCGa -3'
miRNA:   3'- -AGu-GCUUGaa-CGC-GAGGU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 101025 0.66 0.884241
Target:  5'- gCGgGAGCcacaguaGCGCcgCCAGCAgCGCCGc -3'
miRNA:   3'- aGUgCUUGaa-----CGCGa-GGUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 10579 0.66 0.884241
Target:  5'- cCcCGAACccGCGCgccccCCGGCGcCGCCGc -3'
miRNA:   3'- aGuGCUUGaaCGCGa----GGUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 77375 0.66 0.884241
Target:  5'- cCGCGGGCUcG-GC-CCGGCGCGCg- -3'
miRNA:   3'- aGUGCUUGAaCgCGaGGUCGUGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.