miRNA display CGI


Results 41 - 60 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 83305 0.66 0.904226
Target:  5'- gCGCGGGgUcgUGCaGCUCgGGCGgCGCCa -3'
miRNA:   3'- aGUGCUUgA--ACG-CGAGgUCGU-GCGGc -5'
23575 5' -55.7 NC_005261.1 + 3562 0.66 0.904226
Target:  5'- gCGCGGcgccgcuaaggcGCgcGCGCUCCAcCGCGUCGc -3'
miRNA:   3'- aGUGCU------------UGaaCGCGAGGUcGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 1366 0.66 0.904226
Target:  5'- cCGCGGGCccugguccGCGUcCCAGgcCACGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGaGGUC--GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 28782 0.66 0.904226
Target:  5'- cCGCGGcGCggGCGCUCgCGGcCGCGgCGg -3'
miRNA:   3'- aGUGCU-UGaaCGCGAG-GUC-GUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 102255 0.66 0.904226
Target:  5'- -uGCGcGCUcGC-CUCCAGCGC-CCGg -3'
miRNA:   3'- agUGCuUGAaCGcGAGGUCGUGcGGC- -5'
23575 5' -55.7 NC_005261.1 + 102963 0.66 0.904226
Target:  5'- cCGCGGGCgccgcGgGCUCC-GC-CGCCGc -3'
miRNA:   3'- aGUGCUUGaa---CgCGAGGuCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 133299 0.66 0.904226
Target:  5'- cCGCGGcGCggGCGCUCgCGGcCGCGgCGg -3'
miRNA:   3'- aGUGCU-UGaaCGCGAG-GUC-GUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 65120 0.66 0.904226
Target:  5'- gCGCGGACgcggGCuuUCUGGC-CGCCGu -3'
miRNA:   3'- aGUGCUUGaa--CGcgAGGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 67346 0.66 0.904226
Target:  5'- gCACGGcCaUGUGCaccgCCGGCcACGCCa -3'
miRNA:   3'- aGUGCUuGaACGCGa---GGUCG-UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 100014 0.66 0.904226
Target:  5'- gCACGGugaGCgaggUGUugaGCagCAGCACGCCGc -3'
miRNA:   3'- aGUGCU---UGa---ACG---CGagGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 95871 0.66 0.904226
Target:  5'- gUACG--UUUGCGCggCCAGCcCGCCc -3'
miRNA:   3'- aGUGCuuGAACGCGa-GGUCGuGCGGc -5'
23575 5' -55.7 NC_005261.1 + 84752 0.66 0.904226
Target:  5'- gCGCGAGCgcuagUGCGCgCCuGCuGCGUCc -3'
miRNA:   3'- aGUGCUUGa----ACGCGaGGuCG-UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 81853 0.66 0.904226
Target:  5'- cCGCGAGCUccugggagacgUGCGCcucgCCGGU--GCCGg -3'
miRNA:   3'- aGUGCUUGA-----------ACGCGa---GGUCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 108079 0.66 0.904226
Target:  5'- gCGCGGcgccgcuaaggcGCgcGCGCUCCAcCGCGUCGc -3'
miRNA:   3'- aGUGCU------------UGaaCGCGAGGUcGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 104326 0.66 0.903594
Target:  5'- aCGCGGccccGCUUuauacgcGCGCcCCGGUgacGCGCCGg -3'
miRNA:   3'- aGUGCU----UGAA-------CGCGaGGUCG---UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 20843 0.66 0.900398
Target:  5'- uUCGCGGGggcagcguggcggcuCUUGCGCcgcgggCCGGCcauCGCCa -3'
miRNA:   3'- -AGUGCUU---------------GAACGCGa-----GGUCGu--GCGGc -5'
23575 5' -55.7 NC_005261.1 + 25071 0.66 0.900398
Target:  5'- cCAgGAGCagGCGCUCggcgaucuccacguuCAGC-CGCCGc -3'
miRNA:   3'- aGUgCUUGaaCGCGAG---------------GUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 80192 0.66 0.897799
Target:  5'- aUCACGcGGCc-GCGCUCCcuggAGCugcCGCCGc -3'
miRNA:   3'- -AGUGC-UUGaaCGCGAGG----UCGu--GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 41630 0.66 0.897799
Target:  5'- cCACGcGCgacGUGCUgCGGCagaGCGCCGc -3'
miRNA:   3'- aGUGCuUGaa-CGCGAgGUCG---UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 118105 0.66 0.897799
Target:  5'- cUCGCgGAGCcgcUGCGggCCcGCGCGCCu -3'
miRNA:   3'- -AGUG-CUUGa--ACGCgaGGuCGUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.