miRNA display CGI


Results 41 - 60 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 7660 0.66 0.877119
Target:  5'- gCGCGGcggcGCUUcCGC-CCGGCGgGCCGc -3'
miRNA:   3'- aGUGCU----UGAAcGCGaGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 25071 0.66 0.900398
Target:  5'- cCAgGAGCagGCGCUCggcgaucuccacguuCAGC-CGCCGc -3'
miRNA:   3'- aGUgCUUGaaCGCGAG---------------GUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 79271 0.66 0.884241
Target:  5'- aCGCGGGCgccgagGCGCU---GCugGCCGa -3'
miRNA:   3'- aGUGCUUGaa----CGCGAgguCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 80192 0.66 0.897799
Target:  5'- aUCACGcGGCc-GCGCUCCcuggAGCugcCGCCGc -3'
miRNA:   3'- -AGUGC-UUGaaCGCGAGG----UCGu--GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 13961 0.66 0.891136
Target:  5'- gUCGCGGcCggGCGCgCgGGCGgCGCCGc -3'
miRNA:   3'- -AGUGCUuGaaCGCGaGgUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 77375 0.66 0.884241
Target:  5'- cCGCGGGCUcG-GC-CCGGCGCGCg- -3'
miRNA:   3'- aGUGCUUGAaCgCGaGGUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 42617 0.66 0.877119
Target:  5'- cCugGAcCgcGCGgUCCAGCA-GCCGg -3'
miRNA:   3'- aGugCUuGaaCGCgAGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 78656 0.66 0.904226
Target:  5'- gCGCGGcacccGCUgcgGCGCg-CGcGCGCGCCGa -3'
miRNA:   3'- aGUGCU-----UGAa--CGCGagGU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 126217 0.66 0.877119
Target:  5'- gUCGCGGGCgaGCGCUUCAcggaggacuGCuucgaGCCGa -3'
miRNA:   3'- -AGUGCUUGaaCGCGAGGU---------CGug---CGGC- -5'
23575 5' -55.7 NC_005261.1 + 33944 0.66 0.884241
Target:  5'- gCGCGGGCcUGCGaggCCcGCGCaGCCGc -3'
miRNA:   3'- aGUGCUUGaACGCga-GGuCGUG-CGGC- -5'
23575 5' -55.7 NC_005261.1 + 80291 0.66 0.877119
Target:  5'- aCACGGGCgcugGUGCcgggCAGCACGCgCGu -3'
miRNA:   3'- aGUGCUUGaa--CGCGag--GUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 27644 0.66 0.904226
Target:  5'- cCAgGAAC--GCGCaggCCGGCACGUgGg -3'
miRNA:   3'- aGUgCUUGaaCGCGa--GGUCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 105883 0.66 0.904226
Target:  5'- cCGCGGGCccugguccGCGUcCCAGgcCACGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGaGGUC--GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 78702 0.66 0.904226
Target:  5'- gCGCGGuggcgGCgggGCuGCUCCAGgGCGCgCGu -3'
miRNA:   3'- aGUGCU-----UGaa-CG-CGAGGUCgUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 51345 0.66 0.877119
Target:  5'- gCGCGGACcaggGCGCggCCAagGC-CGCCGc -3'
miRNA:   3'- aGUGCUUGaa--CGCGa-GGU--CGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 107164 0.66 0.891136
Target:  5'- aCGCGGGCgggcagcgGCgGCUCCcGCcGCGCUGg -3'
miRNA:   3'- aGUGCUUGaa------CG-CGAGGuCG-UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 133102 0.66 0.877119
Target:  5'- gCGCGAGCgccgGCGggCCGccCGCGCCGa -3'
miRNA:   3'- aGUGCUUGaa--CGCgaGGUc-GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 71362 0.66 0.897799
Target:  5'- cCugGAGCUUGgGCUCUcgguGGCGUGCg- -3'
miRNA:   3'- aGugCUUGAACgCGAGG----UCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 122449 0.66 0.884241
Target:  5'- gCGCGGGCg-GCGCccgCCAGCG-GCCu -3'
miRNA:   3'- aGUGCUUGaaCGCGa--GGUCGUgCGGc -5'
23575 5' -55.7 NC_005261.1 + 74689 0.66 0.877119
Target:  5'- -aGCGGGCacgGCGCgCgGGCAgGCCGc -3'
miRNA:   3'- agUGCUUGaa-CGCGaGgUCGUgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.