Results 41 - 60 of 597 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23575 | 5' | -55.7 | NC_005261.1 | + | 105830 | 0.74 | 0.456325 |
Target: 5'- -gGCGGcgGCacGCGCUCCGGgACGCCGc -3' miRNA: 3'- agUGCU--UGaaCGCGAGGUCgUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 101139 | 0.74 | 0.48468 |
Target: 5'- gCGCGAgGCUgccGCGCggCGGCGCGCCGc -3' miRNA: 3'- aGUGCU-UGAa--CGCGagGUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 13035 | 0.74 | 0.494318 |
Target: 5'- cCACGAGCcaggGCGCggggCCGcGCGCGCCc -3' miRNA: 3'- aGUGCUUGaa--CGCGa---GGU-CGUGCGGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 134442 | 0.74 | 0.48468 |
Target: 5'- gCGCGAGCUggcggaccgcUGCGCUgCGGCcUGCCGc -3' miRNA: 3'- aGUGCUUGA----------ACGCGAgGUCGuGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 29925 | 0.74 | 0.475132 |
Target: 5'- gCGCGAGCUggcggacgcUGCGCUgCGGCcUGCCGc -3' miRNA: 3'- aGUGCUUGA---------ACGCGAgGUCGuGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 134074 | 0.74 | 0.456325 |
Target: 5'- cUCGCGcGGCUcaugUGCgaGCUCuCGGCGCGCCGg -3' miRNA: 3'- -AGUGC-UUGA----ACG--CGAG-GUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 97443 | 0.74 | 0.456325 |
Target: 5'- gCGCGggUcUGgGCUUCGGCGgCGCCGg -3' miRNA: 3'- aGUGCuuGaACgCGAGGUCGU-GCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 13670 | 0.74 | 0.490452 |
Target: 5'- gCGCGAGCg-GCGCgccugggagauggCCGGUACGCCGc -3' miRNA: 3'- aGUGCUUGaaCGCGa------------GGUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 99012 | 0.74 | 0.475132 |
Target: 5'- gUCGCGAGCggcgGCGCggCGGCGCGCg- -3' miRNA: 3'- -AGUGCUUGaa--CGCGagGUCGUGCGgc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 108908 | 0.74 | 0.465679 |
Target: 5'- -gGCGAGCgggGCGCggggucggggcCCAGCACGCCc -3' miRNA: 3'- agUGCUUGaa-CGCGa----------GGUCGUGCGGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 116691 | 0.74 | 0.456325 |
Target: 5'- aUCGCGAGCgccuCGCUcaucggccgCCAGCugGCCGa -3' miRNA: 3'- -AGUGCUUGaac-GCGA---------GGUCGugCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 1313 | 0.74 | 0.456325 |
Target: 5'- -gGCGGcgGCacGCGCUCCGGgACGCCGc -3' miRNA: 3'- agUGCU--UGaaCGCGAGGUCgUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 100344 | 0.73 | 0.553793 |
Target: 5'- gCAUGGccaGCUcGgGCUCCAGCACGCg- -3' miRNA: 3'- aGUGCU---UGAaCgCGAGGUCGUGCGgc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 54234 | 0.73 | 0.553793 |
Target: 5'- gUCACGcGGCgcGCGCUCaugugCAGCGCGCCc -3' miRNA: 3'- -AGUGC-UUGaaCGCGAG-----GUCGUGCGGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 60140 | 0.73 | 0.553793 |
Target: 5'- aCACGGGCUcccagGCGCUgCAG-GCGCCGc -3' miRNA: 3'- aGUGCUUGAa----CGCGAgGUCgUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 99114 | 0.73 | 0.553793 |
Target: 5'- cUCGCGAucaGCgccgagaGCuGCUCCAGCuGCGCCGu -3' miRNA: 3'- -AGUGCU---UGaa-----CG-CGAGGUCG-UGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 51902 | 0.73 | 0.543711 |
Target: 5'- aCAUGGAC--GCGCUgaaguacguggCCAGCACGCUGg -3' miRNA: 3'- aGUGCUUGaaCGCGA-----------GGUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 65531 | 0.73 | 0.533688 |
Target: 5'- gCGCGAcGCUgGCGgaCCuGGCGCGCCGg -3' miRNA: 3'- aGUGCU-UGAaCGCgaGG-UCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 7706 | 0.73 | 0.523733 |
Target: 5'- -gACGAGCgggcGCGCUUCGGCcaGCGCCu -3' miRNA: 3'- agUGCUUGaa--CGCGAGGUCG--UGCGGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 33881 | 0.73 | 0.513849 |
Target: 5'- cUCGCGGGCggcgcUGCGCgacggCCGGC-CGCUGg -3' miRNA: 3'- -AGUGCUUGa----ACGCGa----GGUCGuGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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