miRNA display CGI


Results 21 - 40 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 101696 0.76 0.377063
Target:  5'- -aGCGGGCguggucgaaGCGCUCCAGCuGCGCCa -3'
miRNA:   3'- agUGCUUGaa-------CGCGAGGUCG-UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 30058 0.76 0.385404
Target:  5'- cCGCG-GCcUGCGCUCCAGaCGCGCUa -3'
miRNA:   3'- aGUGCuUGaACGCGAGGUC-GUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 119667 0.76 0.385404
Target:  5'- cCugGAGCUcUG-GUUCCAGCGCGUCGg -3'
miRNA:   3'- aGugCUUGA-ACgCGAGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 104323 0.76 0.360751
Target:  5'- gCGCGGACgcGCGCgUCCAGCG-GCCGg -3'
miRNA:   3'- aGUGCUUGaaCGCG-AGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 3341 0.75 0.437926
Target:  5'- cCGCGccgcgGCGC-CCGGCGCGCCGg -3'
miRNA:   3'- aGUGCuugaaCGCGaGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 60986 0.75 0.447073
Target:  5'- uUCACGAGCaacGCccgcgccuccgGCUCCGGCAuCGCCGu -3'
miRNA:   3'- -AGUGCUUGaa-CG-----------CGAGGUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 63264 0.75 0.437926
Target:  5'- gCGCGGGCgcGCGgcCUCgAGCGCGCCGa -3'
miRNA:   3'- aGUGCUUGaaCGC--GAGgUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 77203 0.75 0.428887
Target:  5'- -gGCGAGCgcgGUGUUCCcGCugGCCGg -3'
miRNA:   3'- agUGCUUGaa-CGCGAGGuCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 34942 0.75 0.437926
Target:  5'- uUCGCGGGgcUGCGCgcggcacCCGGCGCGCUGg -3'
miRNA:   3'- -AGUGCUUgaACGCGa------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 100041 0.75 0.402447
Target:  5'- cCGCGGGCgucaGCUCgAGCGCGCCGc -3'
miRNA:   3'- aGUGCUUGaacgCGAGgUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 99217 0.75 0.419959
Target:  5'- cUCGCGGACgcucUGCGCgUgGGCGCGCUGg -3'
miRNA:   3'- -AGUGCUUGa---ACGCGaGgUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 107858 0.75 0.437926
Target:  5'- cCGCGccgcgGCGC-CCGGCGCGCCGg -3'
miRNA:   3'- aGUGCuugaaCGCGaGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 101562 0.75 0.428887
Target:  5'- cUCGcCGAGgaUGCGCUCgGcGCGCGCCGu -3'
miRNA:   3'- -AGU-GCUUgaACGCGAGgU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 115481 0.75 0.411145
Target:  5'- gUCGCGGGCUcgGcCGCggCGGCGCGCCGc -3'
miRNA:   3'- -AGUGCUUGAa-C-GCGagGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 60080 0.75 0.437926
Target:  5'- cCGCGGGCUgcgUGgGCagCAGCACGCUGg -3'
miRNA:   3'- aGUGCUUGA---ACgCGagGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 73374 0.75 0.414657
Target:  5'- aUCugGGACUgcgacgcggucaugGCGCUgCAGCGCGCgGa -3'
miRNA:   3'- -AGugCUUGAa-------------CGCGAgGUCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 1313 0.74 0.456325
Target:  5'- -gGCGGcgGCacGCGCUCCGGgACGCCGc -3'
miRNA:   3'- agUGCU--UGaaCGCGAGGUCgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 13670 0.74 0.490452
Target:  5'- gCGCGAGCg-GCGCgccugggagauggCCGGUACGCCGc -3'
miRNA:   3'- aGUGCUUGaaCGCGa------------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 134442 0.74 0.48468
Target:  5'- gCGCGAGCUggcggaccgcUGCGCUgCGGCcUGCCGc -3'
miRNA:   3'- aGUGCUUGA----------ACGCGAgGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 97443 0.74 0.456325
Target:  5'- gCGCGggUcUGgGCUUCGGCGgCGCCGg -3'
miRNA:   3'- aGUGCuuGaACgCGAGGUCGU-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.