miRNA display CGI


Results 21 - 40 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 3915 0.68 0.821364
Target:  5'- -aGCGAGacca-GCUCCAGCGCGgCGa -3'
miRNA:   3'- agUGCUUgaacgCGAGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 4132 0.79 0.260669
Target:  5'- -gGCGAGC--GCGCgCCGGCGCGCCGa -3'
miRNA:   3'- agUGCUUGaaCGCGaGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 4185 0.73 0.523733
Target:  5'- cCGCGAGCUUcGCGCUCUgcAGcCAgGCCa -3'
miRNA:   3'- aGUGCUUGAA-CGCGAGG--UC-GUgCGGc -5'
23575 5' -55.7 NC_005261.1 + 4349 0.69 0.760935
Target:  5'- cCGCGGGCUUGCGCagaccacagguaggCgCGGCagucgcgcGCGCCGg -3'
miRNA:   3'- aGUGCUUGAACGCGa-------------G-GUCG--------UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 4957 0.67 0.862212
Target:  5'- -gGCGGGCgccgGCGC-CCugguacucGCGCGCCGc -3'
miRNA:   3'- agUGCUUGaa--CGCGaGGu-------CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 5125 0.68 0.785492
Target:  5'- gCGCGGGCggcccgccgGCGCUC--GCGCGCCu -3'
miRNA:   3'- aGUGCUUGaa-------CGCGAGguCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 5196 0.68 0.803744
Target:  5'- gCACGuGCgUGCGCggUGGCGCGCCc -3'
miRNA:   3'- aGUGCuUGaACGCGagGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 5449 0.73 0.523733
Target:  5'- -gGCGAAgggGCGCUCCAGCAUGaCGg -3'
miRNA:   3'- agUGCUUgaaCGCGAGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 5638 0.68 0.829915
Target:  5'- cUCGcCGGGCcggGCGUccgCgGGCGCGCCGa -3'
miRNA:   3'- -AGU-GCUUGaa-CGCGa--GgUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 5865 0.67 0.84646
Target:  5'- cCGCGAGC--GCGg-CgAGCGCGCCGc -3'
miRNA:   3'- aGUGCUUGaaCGCgaGgUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 6296 0.69 0.766678
Target:  5'- gCGCGGGCaccGCGgUCCcgcGCGCGCCa -3'
miRNA:   3'- aGUGCUUGaa-CGCgAGGu--CGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 7021 0.67 0.845651
Target:  5'- cCACGuACgcggGCGCgCCGGCggcgaccGCGCCGc -3'
miRNA:   3'- aGUGCuUGaa--CGCGaGGUCG-------UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 7561 0.69 0.776151
Target:  5'- gCGCGGGCagGgGCUCgccgaggagCAGCGCGUCGg -3'
miRNA:   3'- aGUGCUUGaaCgCGAG---------GUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 7595 0.67 0.838283
Target:  5'- -gGCGAGCgcacgcGCGC-CCcGCGCGCUGu -3'
miRNA:   3'- agUGCUUGaa----CGCGaGGuCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 7660 0.66 0.877119
Target:  5'- gCGCGGcggcGCUUcCGC-CCGGCGgGCCGc -3'
miRNA:   3'- aGUGCU----UGAAcGCGaGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 7706 0.73 0.523733
Target:  5'- -gACGAGCgggcGCGCUUCGGCcaGCGCCu -3'
miRNA:   3'- agUGCUUGaa--CGCGAGGUCG--UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 7885 0.66 0.910415
Target:  5'- -aGCGAGCggcucUGUUCCGGCGCGgCGc -3'
miRNA:   3'- agUGCUUGaac--GCGAGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 7987 0.67 0.869774
Target:  5'- gUACGAGCcgcugGCGCggcgCCugAGCGgGCCGa -3'
miRNA:   3'- aGUGCUUGaa---CGCGa---GG--UCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 8104 0.66 0.910415
Target:  5'- -gGCGGACggcGCGCggCGGCuCGCCa -3'
miRNA:   3'- agUGCUUGaa-CGCGagGUCGuGCGGc -5'
23575 5' -55.7 NC_005261.1 + 10409 0.66 0.910415
Target:  5'- cUCGCGGccGCgaGCGCgagCGGCcCGCCGc -3'
miRNA:   3'- -AGUGCU--UGaaCGCGag-GUCGuGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.