miRNA display CGI


Results 21 - 40 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 133102 0.66 0.877119
Target:  5'- gCGCGAGCgccgGCGggCCGccCGCGCCGa -3'
miRNA:   3'- aGUGCUUGaa--CGCgaGGUc-GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 132748 0.72 0.584345
Target:  5'- cUCAaGGGCaucGCGCgccuugUCCAGCACGCCGu -3'
miRNA:   3'- -AGUgCUUGaa-CGCG------AGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 131748 0.72 0.598722
Target:  5'- aCGCGGACggcacgccggccgGCGCggCgGGCGCGCCGc -3'
miRNA:   3'- aGUGCUUGaa-----------CGCGa-GgUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 131460 0.7 0.677072
Target:  5'- cUCGCGGGCgccucccGC-CUCCgcgAGCGCGCCGu -3'
miRNA:   3'- -AGUGCUUGaa-----CGcGAGG---UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 131195 0.66 0.891136
Target:  5'- cCGCG-GCgcgGuCGCcgCCGGCGCGCCc -3'
miRNA:   3'- aGUGCuUGaa-C-GCGa-GGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 131011 0.7 0.687302
Target:  5'- cCACGcGCUUcuacGUGUUCCaggccgAGCGCGCCGg -3'
miRNA:   3'- aGUGCuUGAA----CGCGAGG------UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 130768 0.69 0.766678
Target:  5'- cCACGGagcaGCUgGCGCcCCGcGCugGCCGc -3'
miRNA:   3'- aGUGCU----UGAaCGCGaGGU-CGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 130688 0.68 0.821364
Target:  5'- cCGCGcGCgUGCuGCUCgAGCAccuCGCCGa -3'
miRNA:   3'- aGUGCuUGaACG-CGAGgUCGU---GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 129871 0.69 0.776151
Target:  5'- aUCACGAugUUGCuCU-CGGC-CGCCa -3'
miRNA:   3'- -AGUGCUugAACGcGAgGUCGuGCGGc -5'
23575 5' -55.7 NC_005261.1 + 128390 0.67 0.869774
Target:  5'- -gGCGGGCUUGCcC-CgGGCGgGCCGg -3'
miRNA:   3'- agUGCUUGAACGcGaGgUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 128333 0.67 0.869774
Target:  5'- -gGCGGGCUUGCcC-CgGGCGgGCCGg -3'
miRNA:   3'- agUGCUUGAACGcGaGgUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 128276 0.67 0.869774
Target:  5'- -gGCGGGCUUGCcC-CgGGCGgGCCGg -3'
miRNA:   3'- agUGCUUGAACGcGaGgUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 127873 0.66 0.904226
Target:  5'- gCACGAGCgggaGuCGCgCCGGCGC-CCGu -3'
miRNA:   3'- aGUGCUUGaa--C-GCGaGGUCGUGcGGC- -5'
23575 5' -55.7 NC_005261.1 + 126434 0.67 0.854438
Target:  5'- cCACGuACauaUGCGCaaaggCCAGCcGCGCCa -3'
miRNA:   3'- aGUGCuUGa--ACGCGa----GGUCG-UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 126260 0.67 0.869774
Target:  5'- aCACGcGGCUgcUGCGC-CUggagcGCGCGCCGg -3'
miRNA:   3'- aGUGC-UUGA--ACGCGaGGu----CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 126217 0.66 0.877119
Target:  5'- gUCGCGGGCgaGCGCUUCAcggaggacuGCuucgaGCCGa -3'
miRNA:   3'- -AGUGCUUGaaCGCGAGGU---------CGug---CGGC- -5'
23575 5' -55.7 NC_005261.1 + 126205 0.67 0.862212
Target:  5'- gCGCGGACcagcgGCaGCcCCAGCucccgACGCCGg -3'
miRNA:   3'- aGUGCUUGaa---CG-CGaGGUCG-----UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 126045 0.7 0.677072
Target:  5'- gUACGAguGCUccCGCUCCGGCGCcaGCCGc -3'
miRNA:   3'- aGUGCU--UGAacGCGAGGUCGUG--CGGC- -5'
23575 5' -55.7 NC_005261.1 + 125417 0.68 0.803744
Target:  5'- gCGCGGGCg-GCGCUCaGGC-CGCCc -3'
miRNA:   3'- aGUGCUUGaaCGCGAGgUCGuGCGGc -5'
23575 5' -55.7 NC_005261.1 + 125010 0.77 0.322162
Target:  5'- gUC-CGGGCcgUGCGCUCCAGCAgGCUc -3'
miRNA:   3'- -AGuGCUUGa-ACGCGAGGUCGUgCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.