miRNA display CGI


Results 41 - 60 of 597 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 124869 0.7 0.717675
Target:  5'- gUACGAGCggUGcCGC-CCAGCcucCGCCGa -3'
miRNA:   3'- aGUGCUUGa-AC-GCGaGGUCGu--GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 124247 0.66 0.891136
Target:  5'- cCGCGGGCagGCGCcgCgCGGCGcCGCCc -3'
miRNA:   3'- aGUGCUUGaaCGCGa-G-GUCGU-GCGGc -5'
23575 5' -55.7 NC_005261.1 + 123543 0.66 0.910415
Target:  5'- gCGCGAGCgugcccucGCGCaCCGucaCACGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGaGGUc--GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 123239 0.67 0.869774
Target:  5'- cCGCGcuCcggGCGCggCCGGCGCgGCCGc -3'
miRNA:   3'- aGUGCuuGaa-CGCGa-GGUCGUG-CGGC- -5'
23575 5' -55.7 NC_005261.1 + 122950 0.7 0.697485
Target:  5'- cCGCGAcCgcGCGCcCCGGCGgCGCCGc -3'
miRNA:   3'- aGUGCUuGaaCGCGaGGUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 122698 0.77 0.337219
Target:  5'- gUCGCGAACgacgccuucCGCUCCugccuGCACGCCGa -3'
miRNA:   3'- -AGUGCUUGaac------GCGAGGu----CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 122449 0.66 0.884241
Target:  5'- gCGCGGGCg-GCGCccgCCAGCG-GCCu -3'
miRNA:   3'- aGUGCUUGaaCGCGa--GGUCGUgCGGc -5'
23575 5' -55.7 NC_005261.1 + 121965 0.7 0.687302
Target:  5'- cUCGCcguGCc-GCGCUCCAGCGcCGCCc -3'
miRNA:   3'- -AGUGcu-UGaaCGCGAGGUCGU-GCGGc -5'
23575 5' -55.7 NC_005261.1 + 121467 0.67 0.84646
Target:  5'- -gGCGAGCUccucgGCGUaCCGGCugcCGCCa -3'
miRNA:   3'- agUGCUUGAa----CGCGaGGUCGu--GCGGc -5'
23575 5' -55.7 NC_005261.1 + 121342 0.66 0.897799
Target:  5'- ---aGAGCgggUGCGC-CCGGC-CGCUGu -3'
miRNA:   3'- agugCUUGa--ACGCGaGGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 121067 0.69 0.776151
Target:  5'- gCGCGGugU-GCGCggcgCCGGCGgcCGCCa -3'
miRNA:   3'- aGUGCUugAaCGCGa---GGUCGU--GCGGc -5'
23575 5' -55.7 NC_005261.1 + 119667 0.76 0.385404
Target:  5'- cCugGAGCUcUG-GUUCCAGCGCGUCGg -3'
miRNA:   3'- aGugCUUGA-ACgCGAGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 119248 0.66 0.890457
Target:  5'- aUCGCGGccauCUUcgcaugcGCGCUCCuGCuCGCUGg -3'
miRNA:   3'- -AGUGCUu---GAA-------CGCGAGGuCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 119050 0.66 0.879995
Target:  5'- -gGCGAcugcgcccggcagcuGCUUcGCGUgauccgCCGGCugGCCGu -3'
miRNA:   3'- agUGCU---------------UGAA-CGCGa-----GGUCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 118927 0.73 0.504042
Target:  5'- cCGCGGGCgcgGCGCcgCgCGGCugGCCGc -3'
miRNA:   3'- aGUGCUUGaa-CGCGa-G-GUCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 118746 0.69 0.756117
Target:  5'- cUCGcCGAGCaccucugUUGCGCUaCGcGCGCGCCGa -3'
miRNA:   3'- -AGU-GCUUG-------AACGCGAgGU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 118108 0.69 0.776151
Target:  5'- cCGCGcaGACgcUGCGCcgCCGGCucGCGCCGc -3'
miRNA:   3'- aGUGC--UUGa-ACGCGa-GGUCG--UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 118105 0.66 0.897799
Target:  5'- cUCGCgGAGCcgcUGCGggCCcGCGCGCCu -3'
miRNA:   3'- -AGUG-CUUGa--ACGCgaGGuCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 117898 0.66 0.910415
Target:  5'- cCGCGGGCgu-CGCUCguGCGCGgCu -3'
miRNA:   3'- aGUGCUUGaacGCGAGguCGUGCgGc -5'
23575 5' -55.7 NC_005261.1 + 117788 0.67 0.84646
Target:  5'- gCGCGGGCacgucUGCGCUCCcccccgGGaagGCGCCGu -3'
miRNA:   3'- aGUGCUUGa----ACGCGAGG------UCg--UGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.