miRNA display CGI


Results 61 - 80 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 117405 0.68 0.810872
Target:  5'- cCGCGAACgcgcaguucagcUGCGCguaaaCCAgGCGCGUCGg -3'
miRNA:   3'- aGUGCUUGa-----------ACGCGa----GGU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 117355 0.67 0.84646
Target:  5'- cCACGAGCUgGCGauggCCGGCcCGCgGc -3'
miRNA:   3'- aGUGCUUGAaCGCga--GGUCGuGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 116691 0.74 0.456325
Target:  5'- aUCGCGAGCgccuCGCUcaucggccgCCAGCugGCCGa -3'
miRNA:   3'- -AGUGCUUGaac-GCGA---------GGUCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 116048 0.71 0.646194
Target:  5'- cCACGAuggcCUUgGCGCcCCgcguGGCGCGCCGg -3'
miRNA:   3'- aGUGCUu---GAA-CGCGaGG----UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 115570 0.66 0.904226
Target:  5'- aCuCGGGCgccgcccagGCGCcgCCAGCGCGUCu -3'
miRNA:   3'- aGuGCUUGaa-------CGCGa-GGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 115481 0.75 0.411145
Target:  5'- gUCGCGGGCUcgGcCGCggCGGCGCGCCGc -3'
miRNA:   3'- -AGUGCUUGAa-C-GCGagGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 115247 1.08 0.002932
Target:  5'- uUCACGAACUUGCGCUCCAGCACGCCGc -3'
miRNA:   3'- -AGUGCUUGAACGCGAGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 115176 0.72 0.563931
Target:  5'- gCGCGAuggGCacGCGCUUCAGCACgGCCc -3'
miRNA:   3'- aGUGCU---UGaaCGCGAGGUCGUG-CGGc -5'
23575 5' -55.7 NC_005261.1 + 115046 0.68 0.829915
Target:  5'- cCGCGGcgcGCUcgcUGuCGCccCCGGCGCGCCu -3'
miRNA:   3'- aGUGCU---UGA---AC-GCGa-GGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 112402 0.66 0.910415
Target:  5'- -aGCGAGCggcucUGUUCCGGCGCGgCGc -3'
miRNA:   3'- agUGCUUGaac--GCGAGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 111842 0.67 0.854438
Target:  5'- gUCGCgGAGCgcgUGCGCgCCAacCGCGCCu -3'
miRNA:   3'- -AGUG-CUUGa--ACGCGaGGUc-GUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 111408 0.7 0.727662
Target:  5'- -aGCGGACggGCGggCCA-CACGCCGg -3'
miRNA:   3'- agUGCUUGaaCGCgaGGUcGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 110097 0.69 0.737566
Target:  5'- cCGC-AACUcgaGCGCcCCGGCGCGCCc -3'
miRNA:   3'- aGUGcUUGAa--CGCGaGGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 109883 0.66 0.906731
Target:  5'- cCGCGGGCggGCGCcCCGGgGCuacagccccuggaccGCCGg -3'
miRNA:   3'- aGUGCUUGaaCGCGaGGUCgUG---------------CGGC- -5'
23575 5' -55.7 NC_005261.1 + 109643 0.68 0.785492
Target:  5'- gCGCGGGCggcccgccgGCGCUC--GCGCGCCu -3'
miRNA:   3'- aGUGCUUGaa-------CGCGAGguCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 109202 0.7 0.706603
Target:  5'- -gGCGuGCgcagGCGCUCguaggcgCGGCACGCCGc -3'
miRNA:   3'- agUGCuUGaa--CGCGAG-------GUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 108908 0.74 0.465679
Target:  5'- -gGCGAGCgggGCGCggggucggggcCCAGCACGCCc -3'
miRNA:   3'- agUGCUUGaa-CGCGa----------GGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 108732 0.67 0.845651
Target:  5'- gCGCGGGCcagcggcgGCGCcgcggcgUCCgcGGCGCGCCGc -3'
miRNA:   3'- aGUGCUUGaa------CGCG-------AGG--UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 108703 0.73 0.523733
Target:  5'- cCGCGAGCUUcGCGCUCUgcAGcCAgGCCa -3'
miRNA:   3'- aGUGCUUGAA-CGCGAGG--UC-GUgCGGc -5'
23575 5' -55.7 NC_005261.1 + 108413 0.69 0.737566
Target:  5'- -gGCGAGCgcgGCGCgggcgCCcGCGcCGCCGg -3'
miRNA:   3'- agUGCUUGaa-CGCGa----GGuCGU-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.