miRNA display CGI


Results 41 - 60 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 73374 0.75 0.414657
Target:  5'- aUCugGGACUgcgacgcggucaugGCGCUgCAGCGCGCgGa -3'
miRNA:   3'- -AGugCUUGAa-------------CGCGAgGUCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 99217 0.75 0.419959
Target:  5'- cUCGCGGACgcucUGCGCgUgGGCGCGCUGg -3'
miRNA:   3'- -AGUGCUUGa---ACGCGaGgUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 34942 0.75 0.437926
Target:  5'- uUCGCGGGgcUGCGCgcggcacCCGGCGCGCUGg -3'
miRNA:   3'- -AGUGCUUgaACGCGa------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 63264 0.75 0.437926
Target:  5'- gCGCGGGCgcGCGgcCUCgAGCGCGCCGa -3'
miRNA:   3'- aGUGCUUGaaCGC--GAGgUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 107858 0.75 0.437926
Target:  5'- cCGCGccgcgGCGC-CCGGCGCGCCGg -3'
miRNA:   3'- aGUGCuugaaCGCGaGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 105830 0.74 0.456325
Target:  5'- -gGCGGcgGCacGCGCUCCGGgACGCCGc -3'
miRNA:   3'- agUGCU--UGaaCGCGAGGUCgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 88948 0.74 0.456325
Target:  5'- cCGCGGGCUucUGCGCcuUCCucgcggacguGCGCGCCGa -3'
miRNA:   3'- aGUGCUUGA--ACGCG--AGGu---------CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 45642 0.74 0.474182
Target:  5'- cCGCGAGCggcUGCGCUCgcgcgugggcgcgCGGCGCGCgGg -3'
miRNA:   3'- aGUGCUUGa--ACGCGAG-------------GUCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 13268 0.74 0.475132
Target:  5'- gCGCGAuuugagUGCggGCUCCAGgGCGCCGg -3'
miRNA:   3'- aGUGCUuga---ACG--CGAGGUCgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 37937 0.74 0.48468
Target:  5'- aCGCGGACUuuggggccuucUGcCGCUucgugcgccaCCGGCGCGCCGa -3'
miRNA:   3'- aGUGCUUGA-----------AC-GCGA----------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 134442 0.74 0.48468
Target:  5'- gCGCGAGCUggcggaccgcUGCGCUgCGGCcUGCCGc -3'
miRNA:   3'- aGUGCUUGA----------ACGCGAgGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 13670 0.74 0.490452
Target:  5'- gCGCGAGCg-GCGCgccugggagauggCCGGUACGCCGc -3'
miRNA:   3'- aGUGCUUGaaCGCGa------------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 21009 0.73 0.504042
Target:  5'- -gGCGGACUcgGCGC-CCaggcagcgGGCGCGCCGg -3'
miRNA:   3'- agUGCUUGAa-CGCGaGG--------UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 33881 0.73 0.513849
Target:  5'- cUCGCGGGCggcgcUGCGCgacggCCGGC-CGCUGg -3'
miRNA:   3'- -AGUGCUUGa----ACGCGa----GGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 5449 0.73 0.523733
Target:  5'- -gGCGAAgggGCGCUCCAGCAUGaCGg -3'
miRNA:   3'- agUGCUUgaaCGCGAGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 7706 0.73 0.523733
Target:  5'- -gACGAGCgggcGCGCUUCGGCcaGCGCCu -3'
miRNA:   3'- agUGCUUGaa--CGCGAGGUCG--UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 108703 0.73 0.523733
Target:  5'- cCGCGAGCUUcGCGCUCUgcAGcCAgGCCa -3'
miRNA:   3'- aGUGCUUGAA-CGCGAGG--UC-GUgCGGc -5'
23575 5' -55.7 NC_005261.1 + 65531 0.73 0.533688
Target:  5'- gCGCGAcGCUgGCGgaCCuGGCGCGCCGg -3'
miRNA:   3'- aGUGCU-UGAaCGCgaGG-UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 51902 0.73 0.543711
Target:  5'- aCAUGGAC--GCGCUgaaguacguggCCAGCACGCUGg -3'
miRNA:   3'- aGUGCUUGaaCGCGA-----------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 79078 0.72 0.563931
Target:  5'- -gGCGGGCgccGCGCgCCcggGGCGCGCCGg -3'
miRNA:   3'- agUGCUUGaa-CGCGaGG---UCGUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.