Results 41 - 60 of 597 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23575 | 5' | -55.7 | NC_005261.1 | + | 135837 | 0.77 | 0.314824 |
Target: 5'- cCGCGGGC--GCGCUcgccgCCAGCGCGCCGc -3' miRNA: 3'- aGUGCUUGaaCGCGA-----GGUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 59371 | 0.77 | 0.314824 |
Target: 5'- aCGCG-GCUcGCGCUCCGGCggcggGCGCCGc -3' miRNA: 3'- aGUGCuUGAaCGCGAGGUCG-----UGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 20512 | 0.78 | 0.307613 |
Target: 5'- gCGCGGccGCUUGCGggCCcGCGCGCCGg -3' miRNA: 3'- aGUGCU--UGAACGCgaGGuCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 50733 | 0.78 | 0.286741 |
Target: 5'- -gGCGAGCgccUGCGCgCCAGCACgGCCGc -3' miRNA: 3'- agUGCUUGa--ACGCGaGGUCGUG-CGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 4132 | 0.79 | 0.260669 |
Target: 5'- -gGCGAGC--GCGCgCCGGCGCGCCGa -3' miRNA: 3'- agUGCUUGaaCGCGaGGUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 107858 | 0.75 | 0.437926 |
Target: 5'- cCGCGccgcgGCGC-CCGGCGCGCCGg -3' miRNA: 3'- aGUGCuugaaCGCGaGGUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 105830 | 0.74 | 0.456325 |
Target: 5'- -gGCGGcgGCacGCGCUCCGGgACGCCGc -3' miRNA: 3'- agUGCU--UGaaCGCGAGGUCgUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 51902 | 0.73 | 0.543711 |
Target: 5'- aCAUGGAC--GCGCUgaaguacguggCCAGCACGCUGg -3' miRNA: 3'- aGUGCUUGaaCGCGA-----------GGUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 65531 | 0.73 | 0.533688 |
Target: 5'- gCGCGAcGCUgGCGgaCCuGGCGCGCCGg -3' miRNA: 3'- aGUGCU-UGAaCGCgaGG-UCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 108703 | 0.73 | 0.523733 |
Target: 5'- cCGCGAGCUUcGCGCUCUgcAGcCAgGCCa -3' miRNA: 3'- aGUGCUUGAA-CGCGAGG--UC-GUgCGGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 7706 | 0.73 | 0.523733 |
Target: 5'- -gACGAGCgggcGCGCUUCGGCcaGCGCCu -3' miRNA: 3'- agUGCUUGaa--CGCGAGGUCG--UGCGGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 5449 | 0.73 | 0.523733 |
Target: 5'- -gGCGAAgggGCGCUCCAGCAUGaCGg -3' miRNA: 3'- agUGCUUgaaCGCGAGGUCGUGCgGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 33881 | 0.73 | 0.513849 |
Target: 5'- cUCGCGGGCggcgcUGCGCgacggCCGGC-CGCUGg -3' miRNA: 3'- -AGUGCUUGa----ACGCGa----GGUCGuGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 21009 | 0.73 | 0.504042 |
Target: 5'- -gGCGGACUcgGCGC-CCaggcagcgGGCGCGCCGg -3' miRNA: 3'- agUGCUUGAa-CGCGaGG--------UCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 13670 | 0.74 | 0.490452 |
Target: 5'- gCGCGAGCg-GCGCgccugggagauggCCGGUACGCCGc -3' miRNA: 3'- aGUGCUUGaaCGCGa------------GGUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 134442 | 0.74 | 0.48468 |
Target: 5'- gCGCGAGCUggcggaccgcUGCGCUgCGGCcUGCCGc -3' miRNA: 3'- aGUGCUUGA----------ACGCGAgGUCGuGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 37937 | 0.74 | 0.48468 |
Target: 5'- aCGCGGACUuuggggccuucUGcCGCUucgugcgccaCCGGCGCGCCGa -3' miRNA: 3'- aGUGCUUGA-----------AC-GCGA----------GGUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 13268 | 0.74 | 0.475132 |
Target: 5'- gCGCGAuuugagUGCggGCUCCAGgGCGCCGg -3' miRNA: 3'- aGUGCUuga---ACG--CGAGGUCgUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 45642 | 0.74 | 0.474182 |
Target: 5'- cCGCGAGCggcUGCGCUCgcgcgugggcgcgCGGCGCGCgGg -3' miRNA: 3'- aGUGCUUGa--ACGCGAG-------------GUCGUGCGgC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 88948 | 0.74 | 0.456325 |
Target: 5'- cCGCGGGCUucUGCGCcuUCCucgcggacguGCGCGCCGa -3' miRNA: 3'- aGUGCUUGA--ACGCG--AGGu---------CGUGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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