miRNA display CGI


Results 21 - 40 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 134442 0.74 0.48468
Target:  5'- gCGCGAGCUggcggaccgcUGCGCUgCGGCcUGCCGc -3'
miRNA:   3'- aGUGCUUGA----------ACGCGAgGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 37937 0.74 0.48468
Target:  5'- aCGCGGACUuuggggccuucUGcCGCUucgugcgccaCCGGCGCGCCGa -3'
miRNA:   3'- aGUGCUUGA-----------AC-GCGA----------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 28743 0.76 0.385404
Target:  5'- gCGCGGGCcccggccauUUGCGCUCgGGCGCGCaCGc -3'
miRNA:   3'- aGUGCUUG---------AACGCGAGgUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 82810 0.77 0.344937
Target:  5'- cUCGCGGug--GCGCcagCCGGCGCGCCGu -3'
miRNA:   3'- -AGUGCUugaaCGCGa--GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 122698 0.77 0.337219
Target:  5'- gUCGCGAACgacgccuucCGCUCCugccuGCACGCCGa -3'
miRNA:   3'- -AGUGCUUGaac------GCGAGGu----CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 135837 0.77 0.314824
Target:  5'- cCGCGGGC--GCGCUcgccgCCAGCGCGCCGc -3'
miRNA:   3'- aGUGCUUGaaCGCGA-----GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 59371 0.77 0.314824
Target:  5'- aCGCG-GCUcGCGCUCCGGCggcggGCGCCGc -3'
miRNA:   3'- aGUGCuUGAaCGCGAGGUCG-----UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 20512 0.78 0.307613
Target:  5'- gCGCGGccGCUUGCGggCCcGCGCGCCGg -3'
miRNA:   3'- aGUGCU--UGAACGCgaGGuCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 50733 0.78 0.286741
Target:  5'- -gGCGAGCgccUGCGCgCCAGCACgGCCGc -3'
miRNA:   3'- agUGCUUGa--ACGCGaGGUCGUG-CGGC- -5'
23575 5' -55.7 NC_005261.1 + 4132 0.79 0.260669
Target:  5'- -gGCGAGC--GCGCgCCGGCGCGCCGa -3'
miRNA:   3'- agUGCUUGaaCGCGaGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 134576 0.76 0.385404
Target:  5'- cCGCG-GCcUGCGCUCCAGaCGCGCUa -3'
miRNA:   3'- aGUGCuUGaACGCGAGGUC-GUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 73374 0.75 0.414657
Target:  5'- aUCugGGACUgcgacgcggucaugGCGCUgCAGCGCGCgGa -3'
miRNA:   3'- -AGugCUUGAa-------------CGCGAgGUCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 13268 0.74 0.475132
Target:  5'- gCGCGAuuugagUGCggGCUCCAGgGCGCCGg -3'
miRNA:   3'- aGUGCUuga---ACG--CGAGGUCgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 45642 0.74 0.474182
Target:  5'- cCGCGAGCggcUGCGCUCgcgcgugggcgcgCGGCGCGCgGg -3'
miRNA:   3'- aGUGCUUGa--ACGCGAG-------------GUCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 88948 0.74 0.456325
Target:  5'- cCGCGGGCUucUGCGCcuUCCucgcggacguGCGCGCCGa -3'
miRNA:   3'- aGUGCUUGA--ACGCG--AGGu---------CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 105830 0.74 0.456325
Target:  5'- -gGCGGcgGCacGCGCUCCGGgACGCCGc -3'
miRNA:   3'- agUGCU--UGaaCGCGAGGUCgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 107858 0.75 0.437926
Target:  5'- cCGCGccgcgGCGC-CCGGCGCGCCGg -3'
miRNA:   3'- aGUGCuugaaCGCGaGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 63264 0.75 0.437926
Target:  5'- gCGCGGGCgcGCGgcCUCgAGCGCGCCGa -3'
miRNA:   3'- aGUGCUUGaaCGC--GAGgUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 34942 0.75 0.437926
Target:  5'- uUCGCGGGgcUGCGCgcggcacCCGGCGCGCUGg -3'
miRNA:   3'- -AGUGCUUgaACGCGa------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 99217 0.75 0.419959
Target:  5'- cUCGCGGACgcucUGCGCgUgGGCGCGCUGg -3'
miRNA:   3'- -AGUGCUUGa---ACGCGaGgUCGUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.