miRNA display CGI


Results 21 - 40 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 102255 0.66 0.904226
Target:  5'- -uGCGcGCUcGC-CUCCAGCGC-CCGg -3'
miRNA:   3'- agUGCuUGAaCGcGAGGUCGUGcGGC- -5'
23575 5' -55.7 NC_005261.1 + 47119 0.66 0.904226
Target:  5'- ---aGGACgUGCGCgUCCAGguCGUCGc -3'
miRNA:   3'- agugCUUGaACGCG-AGGUCguGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 109883 0.66 0.906731
Target:  5'- cCGCGGGCggGCGCcCCGGgGCuacagccccuggaccGCCGg -3'
miRNA:   3'- aGUGCUUGaaCGCGaGGUCgUG---------------CGGC- -5'
23575 5' -55.7 NC_005261.1 + 98518 0.66 0.910415
Target:  5'- gUACGGGCagGCGCgagaUCCGGCcgguaggcuGCGCCc -3'
miRNA:   3'- aGUGCUUGaaCGCG----AGGUCG---------UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 131195 0.66 0.891136
Target:  5'- cCGCG-GCgcgGuCGCcgCCGGCGCGCCc -3'
miRNA:   3'- aGUGCuUGaa-C-GCGa-GGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 93251 0.66 0.897799
Target:  5'- gUCGCcuucGACcgGCGCgCCAGCGCGCg- -3'
miRNA:   3'- -AGUGc---UUGaaCGCGaGGUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 57321 0.66 0.904226
Target:  5'- cCAUG-ACUcGCaGCUgCCAGCcgGCGCCGu -3'
miRNA:   3'- aGUGCuUGAaCG-CGA-GGUCG--UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 105745 0.66 0.910415
Target:  5'- cCACGAACUcGCGCgcggggaCCugggugcucagGGCGCGCUc -3'
miRNA:   3'- aGUGCUUGAaCGCGa------GG-----------UCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 105512 0.66 0.897799
Target:  5'- -gACGAA---GUGCaCCAGCGCGCCc -3'
miRNA:   3'- agUGCUUgaaCGCGaGGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 123543 0.66 0.910415
Target:  5'- gCGCGAGCgugcccucGCGCaCCGucaCACGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGaGGUc--GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 48495 0.66 0.904226
Target:  5'- -gACGAucucguGCUUGCGCagguUCUugacgcGCGCGCCGc -3'
miRNA:   3'- agUGCU------UGAACGCG----AGGu-----CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 20843 0.66 0.900398
Target:  5'- uUCGCGGGggcagcguggcggcuCUUGCGCcgcgggCCGGCcauCGCCa -3'
miRNA:   3'- -AGUGCUU---------------GAACGCGa-----GGUCGu--GCGGc -5'
23575 5' -55.7 NC_005261.1 + 1366 0.66 0.904226
Target:  5'- cCGCGGGCccugguccGCGUcCCAGgcCACGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGaGGUC--GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 102963 0.66 0.904226
Target:  5'- cCGCGGGCgccgcGgGCUCC-GC-CGCCGc -3'
miRNA:   3'- aGUGCUUGaa---CgCGAGGuCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 7885 0.66 0.910415
Target:  5'- -aGCGAGCggcucUGUUCCGGCGCGgCGc -3'
miRNA:   3'- agUGCUUGaac--GCGAGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 74491 0.66 0.910415
Target:  5'- -gGCGGGaucucgGCGCUCUucggGGCGgCGCCGg -3'
miRNA:   3'- agUGCUUgaa---CGCGAGG----UCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 51392 0.66 0.891136
Target:  5'- gCGCGAACUccGCGagcggagCCcGCGCGCCc -3'
miRNA:   3'- aGUGCUUGAa-CGCga-----GGuCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 124247 0.66 0.891136
Target:  5'- cCGCGGGCagGCGCcgCgCGGCGcCGCCc -3'
miRNA:   3'- aGUGCUUGaaCGCGa-G-GUCGU-GCGGc -5'
23575 5' -55.7 NC_005261.1 + 105945 0.66 0.893829
Target:  5'- cCGCGAGCgcgccgucgauggccUcgGCGC-CCAGCGCGgCGu -3'
miRNA:   3'- aGUGCUUG---------------Aa-CGCGaGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 70813 0.66 0.897799
Target:  5'- cCGCGccGGCggccccggGCGCgCCGGCGCGCgCGu -3'
miRNA:   3'- aGUGC--UUGaa------CGCGaGGUCGUGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.