miRNA display CGI


Results 21 - 40 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 37752 0.66 0.910415
Target:  5'- cCGCGGGCgccGCGCcgCCcaaGCGCCGg -3'
miRNA:   3'- aGUGCUUGaa-CGCGa-GGucgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 19063 0.66 0.897799
Target:  5'- gUACGGGCUgcGCgGCUCuCGGCGCGUg- -3'
miRNA:   3'- aGUGCUUGAa-CG-CGAG-GUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 54746 0.66 0.897799
Target:  5'- -gACGAACgcGCGCUcgaucgccgCCAGUGCGgCGg -3'
miRNA:   3'- agUGCUUGaaCGCGA---------GGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 11052 0.66 0.904226
Target:  5'- aCuCGGGCgccgcccagGCGCcgCCAGCGCGUCu -3'
miRNA:   3'- aGuGCUUGaa-------CGCGa-GGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 28782 0.66 0.904226
Target:  5'- cCGCGGcGCggGCGCUCgCGGcCGCGgCGg -3'
miRNA:   3'- aGUGCU-UGaaCGCGAG-GUC-GUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 103511 0.66 0.891136
Target:  5'- cCGCGGACggcgGCGUcCgCGGCAucCGCCGc -3'
miRNA:   3'- aGUGCUUGaa--CGCGaG-GUCGU--GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 101798 0.66 0.893829
Target:  5'- -gGCGGGgcUGCGCacguacgucaccuccUCCAGCGCGCgGc -3'
miRNA:   3'- agUGCUUgaACGCG---------------AGGUCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 84755 0.66 0.909807
Target:  5'- aCACGuuCUUGCccccguugaggccGCUCCAGUugccCGCCu -3'
miRNA:   3'- aGUGCuuGAACG-------------CGAGGUCGu---GCGGc -5'
23575 5' -55.7 NC_005261.1 + 81496 0.66 0.897799
Target:  5'- cCGCG-GCUaGCGCggCGcGCGCGCCGc -3'
miRNA:   3'- aGUGCuUGAaCGCGagGU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 102255 0.66 0.904226
Target:  5'- -uGCGcGCUcGC-CUCCAGCGC-CCGg -3'
miRNA:   3'- agUGCuUGAaCGcGAGGUCGUGcGGC- -5'
23575 5' -55.7 NC_005261.1 + 30289 0.66 0.910415
Target:  5'- cCugGAcGCUggcccgcGCGCUCuuCAGCcCGCCGg -3'
miRNA:   3'- aGugCU-UGAa------CGCGAG--GUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 72266 0.66 0.910415
Target:  5'- cCGCGAugUacuCGC-CCAGCA-GCCGg -3'
miRNA:   3'- aGUGCUugAac-GCGaGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 16057 0.66 0.891136
Target:  5'- -aGCGGGCccGCGCcgagCCGGCGCGUg- -3'
miRNA:   3'- agUGCUUGaaCGCGa---GGUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 81448 0.66 0.891136
Target:  5'- cCGCG-GCggGCGCcgCCAGCagcagggcccACGCCGc -3'
miRNA:   3'- aGUGCuUGaaCGCGa-GGUCG----------UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 70813 0.66 0.897799
Target:  5'- cCGCGccGGCggccccggGCGCgCCGGCGCGCgCGu -3'
miRNA:   3'- aGUGC--UUGaa------CGCGaGGUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 133449 0.66 0.904226
Target:  5'- gCACGAccGCcugUGCGCcucgcucaUCCAGCAgugcuuCGCCa -3'
miRNA:   3'- aGUGCU--UGa--ACGCG--------AGGUCGU------GCGGc -5'
23575 5' -55.7 NC_005261.1 + 3562 0.66 0.904226
Target:  5'- gCGCGGcgccgcuaaggcGCgcGCGCUCCAcCGCGUCGc -3'
miRNA:   3'- aGUGCU------------UGaaCGCGAGGUcGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 74491 0.66 0.910415
Target:  5'- -gGCGGGaucucgGCGCUCUucggGGCGgCGCCGg -3'
miRNA:   3'- agUGCUUgaa---CGCGAGG----UCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 127873 0.66 0.904226
Target:  5'- gCACGAGCgggaGuCGCgCCGGCGC-CCGu -3'
miRNA:   3'- aGUGCUUGaa--C-GCGaGGUCGUGcGGC- -5'
23575 5' -55.7 NC_005261.1 + 59410 0.66 0.897799
Target:  5'- cUCGCcGGCgccgGCGCUgucgcgcggcCCGGCagGCGCCGg -3'
miRNA:   3'- -AGUGcUUGaa--CGCGA----------GGUCG--UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.