miRNA display CGI


Results 1 - 20 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 37752 0.66 0.910415
Target:  5'- cCGCGGGCgccGCGCcgCCcaaGCGCCGg -3'
miRNA:   3'- aGUGCUUGaa-CGCGa-GGucgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 57321 0.66 0.904226
Target:  5'- cCAUG-ACUcGCaGCUgCCAGCcgGCGCCGu -3'
miRNA:   3'- aGUGCuUGAaCG-CGA-GGUCG--UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 47119 0.66 0.904226
Target:  5'- ---aGGACgUGCGCgUCCAGguCGUCGc -3'
miRNA:   3'- agugCUUGaACGCG-AGGUCguGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 115247 1.08 0.002932
Target:  5'- uUCACGAACUUGCGCUCCAGCACGCCGc -3'
miRNA:   3'- -AGUGCUUGAACGCGAGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 74491 0.66 0.910415
Target:  5'- -gGCGGGaucucgGCGCUCUucggGGCGgCGCCGg -3'
miRNA:   3'- agUGCUUgaa---CGCGAGG----UCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 72266 0.66 0.910415
Target:  5'- cCGCGAugUacuCGC-CCAGCA-GCCGg -3'
miRNA:   3'- aGUGCUugAac-GCGaGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 7885 0.66 0.910415
Target:  5'- -aGCGAGCggcucUGUUCCGGCGCGgCGc -3'
miRNA:   3'- agUGCUUGaac--GCGAGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 84755 0.66 0.909807
Target:  5'- aCACGuuCUUGCccccguugaggccGCUCCAGUugccCGCCu -3'
miRNA:   3'- aGUGCuuGAACG-------------CGAGGUCGu---GCGGc -5'
23575 5' -55.7 NC_005261.1 + 102963 0.66 0.904226
Target:  5'- cCGCGGGCgccgcGgGCUCC-GC-CGCCGc -3'
miRNA:   3'- aGUGCUUGaa---CgCGAGGuCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 83305 0.66 0.904226
Target:  5'- gCGCGGGgUcgUGCaGCUCgGGCGgCGCCa -3'
miRNA:   3'- aGUGCUUgA--ACG-CGAGgUCGU-GCGGc -5'
23575 5' -55.7 NC_005261.1 + 3562 0.66 0.904226
Target:  5'- gCGCGGcgccgcuaaggcGCgcGCGCUCCAcCGCGUCGc -3'
miRNA:   3'- aGUGCU------------UGaaCGCGAGGUcGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 109883 0.66 0.906731
Target:  5'- cCGCGGGCggGCGCcCCGGgGCuacagccccuggaccGCCGg -3'
miRNA:   3'- aGUGCUUGaaCGCGaGGUCgUG---------------CGGC- -5'
23575 5' -55.7 NC_005261.1 + 123543 0.66 0.910415
Target:  5'- gCGCGAGCgugcccucGCGCaCCGucaCACGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGaGGUc--GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 1366 0.66 0.904226
Target:  5'- cCGCGGGCccugguccGCGUcCCAGgcCACGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGaGGUC--GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 105745 0.66 0.910415
Target:  5'- cCACGAACUcGCGCgcggggaCCugggugcucagGGCGCGCUc -3'
miRNA:   3'- aGUGCUUGAaCGCGa------GG-----------UCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 45968 0.66 0.909807
Target:  5'- --uUGAGCaUGCGCgCCAGCucuugcagcacggGCGCCa -3'
miRNA:   3'- aguGCUUGaACGCGaGGUCG-------------UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 133449 0.66 0.904226
Target:  5'- gCACGAccGCcugUGCGCcucgcucaUCCAGCAgugcuuCGCCa -3'
miRNA:   3'- aGUGCU--UGa--ACGCG--------AGGUCGU------GCGGc -5'
23575 5' -55.7 NC_005261.1 + 48495 0.66 0.904226
Target:  5'- -gACGAucucguGCUUGCGCagguUCUugacgcGCGCGCCGc -3'
miRNA:   3'- agUGCU------UGAACGCG----AGGu-----CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 98518 0.66 0.910415
Target:  5'- gUACGGGCagGCGCgagaUCCGGCcgguaggcuGCGCCc -3'
miRNA:   3'- aGUGCUUGaaCGCG----AGGUCG---------UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 30289 0.66 0.910415
Target:  5'- cCugGAcGCUggcccgcGCGCUCuuCAGCcCGCCGg -3'
miRNA:   3'- aGugCU-UGAa------CGCGAG--GUCGuGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.