miRNA display CGI


Results 1 - 20 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 126217 0.66 0.877119
Target:  5'- gUCGCGGGCgaGCGCUUCAcggaggacuGCuucgaGCCGa -3'
miRNA:   3'- -AGUGCUUGaaCGCGAGGU---------CGug---CGGC- -5'
23575 5' -55.7 NC_005261.1 + 14276 0.66 0.884241
Target:  5'- cUCGCgGAGCggGCGCUgC-GCugGCUGu -3'
miRNA:   3'- -AGUG-CUUGaaCGCGAgGuCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 101025 0.66 0.884241
Target:  5'- gCGgGAGCcacaguaGCGCcgCCAGCAgCGCCGc -3'
miRNA:   3'- aGUgCUUGaa-----CGCGa-GGUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 96282 0.66 0.882128
Target:  5'- cCACaAGCUaaagugccgcgUGCGCUCCAGCGagaauguccucaccUGCCu -3'
miRNA:   3'- aGUGcUUGA-----------ACGCGAGGUCGU--------------GCGGc -5'
23575 5' -55.7 NC_005261.1 + 84511 0.66 0.884241
Target:  5'- -uGCGGGC--GCGC-CgCAGCugGCCGc -3'
miRNA:   3'- agUGCUUGaaCGCGaG-GUCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 55667 0.66 0.884241
Target:  5'- gCGCGAGCU---GCUgCGGCGCGCgGc -3'
miRNA:   3'- aGUGCUUGAacgCGAgGUCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 10579 0.66 0.884241
Target:  5'- cCcCGAACccGCGCgccccCCGGCGcCGCCGc -3'
miRNA:   3'- aGuGCUUGaaCGCGa----GGUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 42617 0.66 0.877119
Target:  5'- cCugGAcCgcGCGgUCCAGCA-GCCGg -3'
miRNA:   3'- aGugCUuGaaCGCgAGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 54657 0.66 0.877119
Target:  5'- -gGCGGccGCggGCGCcgCgGGCACGCCc -3'
miRNA:   3'- agUGCU--UGaaCGCGa-GgUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 133102 0.66 0.877119
Target:  5'- gCGCGAGCgccgGCGggCCGccCGCGCCGa -3'
miRNA:   3'- aGUGCUUGaa--CGCgaGGUc-GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 74689 0.66 0.877119
Target:  5'- -aGCGGGCacgGCGCgCgGGCAgGCCGc -3'
miRNA:   3'- agUGCUUGaa-CGCGaGgUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 35404 0.66 0.877119
Target:  5'- gCGCGGcGCgagGCGCagaCCGGCGCGCgGc -3'
miRNA:   3'- aGUGCU-UGaa-CGCGa--GGUCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 80291 0.66 0.877119
Target:  5'- aCACGGGCgcugGUGCcgggCAGCACGCgCGu -3'
miRNA:   3'- aGUGCUUGaa--CGCGag--GUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 119050 0.66 0.879995
Target:  5'- -gGCGAcugcgcccggcagcuGCUUcGCGUgauccgCCGGCugGCCGu -3'
miRNA:   3'- agUGCU---------------UGAA-CGCGa-----GGUCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 70817 0.66 0.884241
Target:  5'- cCGCGGGCgcugcuggcgGCGCUggucCUGGCGCGCgCGg -3'
miRNA:   3'- aGUGCUUGaa--------CGCGA----GGUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 7660 0.66 0.877119
Target:  5'- gCGCGGcggcGCUUcCGC-CCGGCGgGCCGc -3'
miRNA:   3'- aGUGCU----UGAAcGCGaGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 51345 0.66 0.877119
Target:  5'- gCGCGGACcaggGCGCggCCAagGC-CGCCGc -3'
miRNA:   3'- aGUGCUUGaa--CGCGa-GGU--CGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 90655 0.66 0.877119
Target:  5'- gCGCGcGGCUcugcgccaUGCGCgaCgGGCACGCCa -3'
miRNA:   3'- aGUGC-UUGA--------ACGCGa-GgUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 33944 0.66 0.884241
Target:  5'- gCGCGGGCcUGCGaggCCcGCGCaGCCGc -3'
miRNA:   3'- aGUGCUUGaACGCga-GGuCGUG-CGGC- -5'
23575 5' -55.7 NC_005261.1 + 63967 0.66 0.877841
Target:  5'- cCGCGGACgcgcGCGCgcgaaugggacguacUCGGCGCGCCc -3'
miRNA:   3'- aGUGCUUGaa--CGCGa--------------GGUCGUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.