miRNA display CGI


Results 1 - 20 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 1143 0.7 0.697485
Target:  5'- aCGCGGACgagGagaGCacuUCCAcGCGCGCCGg -3'
miRNA:   3'- aGUGCUUGaa-Cg--CG---AGGU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 1313 0.74 0.456325
Target:  5'- -gGCGGcgGCacGCGCUCCGGgACGCCGc -3'
miRNA:   3'- agUGCU--UGaaCGCGAGGUCgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 1366 0.66 0.904226
Target:  5'- cCGCGGGCccugguccGCGUcCCAGgcCACGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGaGGUC--GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 1516 0.71 0.646194
Target:  5'- cUCGuCGGGCgccaGCUCCAGCgcGCGCCGc -3'
miRNA:   3'- -AGU-GCUUGaacgCGAGGUCG--UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 1627 0.68 0.794693
Target:  5'- gCGCGcGCgc-CGCUCCAcGCuGCGCCGg -3'
miRNA:   3'- aGUGCuUGaacGCGAGGU-CG-UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 1876 0.7 0.707612
Target:  5'- cCGCGAggccaGCacgGCGCgcgCCAGCgcGCGCCGc -3'
miRNA:   3'- aGUGCU-----UGaa-CGCGa--GGUCG--UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 2104 0.7 0.677072
Target:  5'- gUCGCGAGCagcagcaCGC-CCuGCGCGCCGa -3'
miRNA:   3'- -AGUGCUUGaac----GCGaGGuCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 2411 0.68 0.812638
Target:  5'- cCGCGGGCcccGCGCggCGGCGgGCCGc -3'
miRNA:   3'- aGUGCUUGaa-CGCGagGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 2647 0.66 0.891136
Target:  5'- aCGCGGGCgggcagcgGCgGCUCCcGCcGCGCUGg -3'
miRNA:   3'- aGUGCUUGaa------CG-CGAGGuCG-UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 2730 0.68 0.794693
Target:  5'- -gGCcGACUUGCGCUUgcgccgCGGCGgGCCGu -3'
miRNA:   3'- agUGcUUGAACGCGAG------GUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 3125 0.67 0.838283
Target:  5'- aCGCGGGguccgcCUcGCGCUCC-GC-CGCCGg -3'
miRNA:   3'- aGUGCUU------GAaCGCGAGGuCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 3341 0.75 0.437926
Target:  5'- cCGCGccgcgGCGC-CCGGCGCGCCGg -3'
miRNA:   3'- aGUGCuugaaCGCGaGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 3376 0.71 0.666805
Target:  5'- cCGCGAGCgcgGC-CgCCAGcCGCGCCGg -3'
miRNA:   3'- aGUGCUUGaa-CGcGaGGUC-GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 3496 0.69 0.766678
Target:  5'- cCACGGuuc-GCGCcgCCAGCGCgGCCGc -3'
miRNA:   3'- aGUGCUugaaCGCGa-GGUCGUG-CGGC- -5'
23575 5' -55.7 NC_005261.1 + 3562 0.66 0.904226
Target:  5'- gCGCGGcgccgcuaaggcGCgcGCGCUCCAcCGCGUCGc -3'
miRNA:   3'- aGUGCU------------UGaaCGCGAGGUcGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 3628 0.7 0.687302
Target:  5'- ---gGAGCacGCGCUCCgGGUGCGCCGc -3'
miRNA:   3'- agugCUUGaaCGCGAGG-UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 3659 0.71 0.635867
Target:  5'- gUCugGAGCgcagGcCGCggCCGGCAgGCCGc -3'
miRNA:   3'- -AGugCUUGaa--C-GCGa-GGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 3712 0.67 0.84646
Target:  5'- cCGgGAGCUcagacGCGCcgcugCCGGaCGCGCCGg -3'
miRNA:   3'- aGUgCUUGAa----CGCGa----GGUC-GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 3829 0.69 0.766678
Target:  5'- cCGCGGGCccggGCGCUggcggCAGCGgCGCCGg -3'
miRNA:   3'- aGUGCUUGaa--CGCGAg----GUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 3896 0.69 0.737566
Target:  5'- -gGCGAGCgcgGCGCgggcgCCcGCGcCGCCGg -3'
miRNA:   3'- agUGCUUGaa-CGCGa----GGuCGU-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.