miRNA display CGI


Results 1 - 20 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 115247 1.08 0.002932
Target:  5'- uUCACGAACUUGCGCUCCAGCACGCCGc -3'
miRNA:   3'- -AGUGCUUGAACGCGAGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 95711 0.8 0.225223
Target:  5'- gCGCGGGCUcGCGCUCgGGCcCGCCGc -3'
miRNA:   3'- aGUGCUUGAaCGCGAGgUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 103263 0.8 0.230833
Target:  5'- cCGCGcACagcCGCUCCAGCGCGCCGg -3'
miRNA:   3'- aGUGCuUGaacGCGAGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 19962 0.8 0.236561
Target:  5'- gUCACGAAg-UGCGCgcagugcaCCGGCACGCCGc -3'
miRNA:   3'- -AGUGCUUgaACGCGa-------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 106764 0.8 0.236561
Target:  5'- cCACGAGCUUGCcgGCggCCAGCccaGCGCCGu -3'
miRNA:   3'- aGUGCUUGAACG--CGa-GGUCG---UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 93925 0.79 0.242407
Target:  5'- cCGCGGGCUUGCGCcgUCCGcGgGCGCCGc -3'
miRNA:   3'- aGUGCUUGAACGCG--AGGU-CgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 102798 0.79 0.25446
Target:  5'- cCGCGAGCgcgGCGC-CCAGC-CGCCGc -3'
miRNA:   3'- aGUGCUUGaa-CGCGaGGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 4132 0.79 0.260669
Target:  5'- -gGCGAGC--GCGCgCCGGCGCGCCGa -3'
miRNA:   3'- agUGCUUGaaCGCGaGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 50733 0.78 0.286741
Target:  5'- -gGCGAGCgccUGCGCgCCAGCACgGCCGc -3'
miRNA:   3'- agUGCUUGa--ACGCGaGGUCGUG-CGGC- -5'
23575 5' -55.7 NC_005261.1 + 20512 0.78 0.307613
Target:  5'- gCGCGGccGCUUGCGggCCcGCGCGCCGg -3'
miRNA:   3'- aGUGCU--UGAACGCgaGGuCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 71114 0.77 0.314824
Target:  5'- gCGCGcAGCUUGCGC-CC-GCGCGCCa -3'
miRNA:   3'- aGUGC-UUGAACGCGaGGuCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 37225 0.77 0.314824
Target:  5'- cCGCGGGCUUGCGCggCgCGGCGCGUgGa -3'
miRNA:   3'- aGUGCUUGAACGCGa-G-GUCGUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 135837 0.77 0.314824
Target:  5'- cCGCGGGC--GCGCUcgccgCCAGCGCGCCGc -3'
miRNA:   3'- aGUGCUUGaaCGCGA-----GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 31320 0.77 0.314824
Target:  5'- cCGCGGGC--GCGCUcgccgCCAGCGCGCCGc -3'
miRNA:   3'- aGUGCUUGaaCGCGA-----GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 59371 0.77 0.314824
Target:  5'- aCGCG-GCUcGCGCUCCGGCggcggGCGCCGc -3'
miRNA:   3'- aGUGCuUGAaCGCGAGGUCG-----UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 125010 0.77 0.322162
Target:  5'- gUC-CGGGCcgUGCGCUCCAGCAgGCUc -3'
miRNA:   3'- -AGuGCUUGa-ACGCGAGGUCGUgCGGc -5'
23575 5' -55.7 NC_005261.1 + 122698 0.77 0.337219
Target:  5'- gUCGCGAACgacgccuucCGCUCCugccuGCACGCCGa -3'
miRNA:   3'- -AGUGCUUGaac------GCGAGGu----CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 82810 0.77 0.344937
Target:  5'- cUCGCGGug--GCGCcagCCGGCGCGCCGu -3'
miRNA:   3'- -AGUGCUugaaCGCGa--GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 104323 0.76 0.360751
Target:  5'- gCGCGGACgcGCGCgUCCAGCG-GCCGg -3'
miRNA:   3'- aGUGCUUGaaCGCG-AGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 101696 0.76 0.377063
Target:  5'- -aGCGGGCguggucgaaGCGCUCCAGCuGCGCCa -3'
miRNA:   3'- agUGCUUGaa-------CGCGAGGUCG-UGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.