miRNA display CGI


Results 1 - 20 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 136382 0.66 0.884241
Target:  5'- gUCuuCGGGCccgGCGcCUUCGcGCGCGCCGa -3'
miRNA:   3'- -AGu-GCUUGaa-CGC-GAGGU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 136345 0.68 0.812638
Target:  5'- gCGCGcGCUgGCGCgcgCCGuGCugGCCu -3'
miRNA:   3'- aGUGCuUGAaCGCGa--GGU-CGugCGGc -5'
23575 5' -55.7 NC_005261.1 + 136242 0.7 0.687302
Target:  5'- cCGCGAACUggccGCGCgauggcCCGGC-CGUCGg -3'
miRNA:   3'- aGUGCUUGAa---CGCGa-----GGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 135838 0.66 0.883539
Target:  5'- cCugGGGCUUGCGUggCgGGCuucaucgACGCCu -3'
miRNA:   3'- aGugCUUGAACGCGa-GgUCG-------UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 135837 0.77 0.314824
Target:  5'- cCGCGGGC--GCGCUcgccgCCAGCGCGCCGc -3'
miRNA:   3'- aGUGCUUGaaCGCGA-----GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 135761 0.72 0.574117
Target:  5'- gCGCGG---UGCGCUCCGGCGCagagcgcguGCCGc -3'
miRNA:   3'- aGUGCUugaACGCGAGGUCGUG---------CGGC- -5'
23575 5' -55.7 NC_005261.1 + 135529 0.7 0.727662
Target:  5'- cCAgGGGCccgGCGCcggccaaaagCCGGCGCGCCGc -3'
miRNA:   3'- aGUgCUUGaa-CGCGa---------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 135406 0.66 0.887027
Target:  5'- cCGCGAccuCUaccgcauguucgaggUGCGCUC--GCACGCCGc -3'
miRNA:   3'- aGUGCUu--GA---------------ACGCGAGguCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 134853 0.71 0.643097
Target:  5'- gCGCGGcugGCggccGCGCUcgcggcccugaaggCCGGCGCGCCGg -3'
miRNA:   3'- aGUGCU---UGaa--CGCGA--------------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 134806 0.66 0.910415
Target:  5'- cCugGAcGCUggcccgcGCGCUCuuCAGCcCGCCGg -3'
miRNA:   3'- aGugCU-UGAa------CGCGAG--GUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 134576 0.76 0.385404
Target:  5'- cCGCG-GCcUGCGCUCCAGaCGCGCUa -3'
miRNA:   3'- aGUGCuUGaACGCGAGGUC-GUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 134494 0.71 0.65651
Target:  5'- gCGCGG---UGCGCcgCCGGCGCGuCCGg -3'
miRNA:   3'- aGUGCUugaACGCGa-GGUCGUGC-GGC- -5'
23575 5' -55.7 NC_005261.1 + 134442 0.74 0.48468
Target:  5'- gCGCGAGCUggcggaccgcUGCGCUgCGGCcUGCCGc -3'
miRNA:   3'- aGUGCUUGA----------ACGCGAgGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 134440 0.68 0.794693
Target:  5'- cUCGCGGggcuGCUggugaagGCGCUCUAcCugGCCGc -3'
miRNA:   3'- -AGUGCU----UGAa------CGCGAGGUcGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 134353 0.69 0.776151
Target:  5'- cUCGcCGAGC-UGCGCgCCGuGCuCGCCGg -3'
miRNA:   3'- -AGU-GCUUGaACGCGaGGU-CGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 134074 0.74 0.456325
Target:  5'- cUCGCGcGGCUcaugUGCgaGCUCuCGGCGCGCCGg -3'
miRNA:   3'- -AGUGC-UUGA----ACG--CGAG-GUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 133833 0.71 0.625537
Target:  5'- gCGCGGccGCgUGCGCgccguggCCGGCGCGCgCGa -3'
miRNA:   3'- aGUGCU--UGaACGCGa------GGUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 133449 0.66 0.904226
Target:  5'- gCACGAccGCcugUGCGCcucgcucaUCCAGCAgugcuuCGCCa -3'
miRNA:   3'- aGUGCU--UGa--ACGCG--------AGGUCGU------GCGGc -5'
23575 5' -55.7 NC_005261.1 + 133299 0.66 0.904226
Target:  5'- cCGCGGcGCggGCGCUCgCGGcCGCGgCGg -3'
miRNA:   3'- aGUGCU-UGaaCGCGAG-GUC-GUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 133258 0.66 0.891136
Target:  5'- cCGCaGGCggcGCGCgaguaCCAGgGCGCCGg -3'
miRNA:   3'- aGUGcUUGaa-CGCGa----GGUCgUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.