miRNA display CGI


Results 21 - 40 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 64866 0.66 0.884241
Target:  5'- cCGCGuGCUgGCGCcgCCugAGCcgGCGCCGg -3'
miRNA:   3'- aGUGCuUGAaCGCGa-GG--UCG--UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 7660 0.66 0.877119
Target:  5'- gCGCGGcggcGCUUcCGC-CCGGCGgGCCGc -3'
miRNA:   3'- aGUGCU----UGAAcGCGaGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 126217 0.66 0.877119
Target:  5'- gUCGCGGGCgaGCGCUUCAcggaggacuGCuucgaGCCGa -3'
miRNA:   3'- -AGUGCUUGaaCGCGAGGU---------CGug---CGGC- -5'
23575 5' -55.7 NC_005261.1 + 77375 0.66 0.884241
Target:  5'- cCGCGGGCUcG-GC-CCGGCGCGCg- -3'
miRNA:   3'- aGUGCUUGAaCgCGaGGUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 70817 0.66 0.884241
Target:  5'- cCGCGGGCgcugcuggcgGCGCUggucCUGGCGCGCgCGg -3'
miRNA:   3'- aGUGCUUGaa--------CGCGA----GGUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 107164 0.66 0.891136
Target:  5'- aCGCGGGCgggcagcgGCgGCUCCcGCcGCGCUGg -3'
miRNA:   3'- aGUGCUUGaa------CG-CGAGGuCG-UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 27547 0.66 0.897799
Target:  5'- gCGCGGAagccCUcGUGCUCCAG-GCGCUGc -3'
miRNA:   3'- aGUGCUU----GAaCGCGAGGUCgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 81722 0.66 0.891136
Target:  5'- aCGCGGccACUUGCGCaaacgcgCCugaGGCGCGCa- -3'
miRNA:   3'- aGUGCU--UGAACGCGa------GG---UCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 51345 0.66 0.877119
Target:  5'- gCGCGGACcaggGCGCggCCAagGC-CGCCGc -3'
miRNA:   3'- aGUGCUUGaa--CGCGa-GGU--CGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 96282 0.66 0.882128
Target:  5'- cCACaAGCUaaagugccgcgUGCGCUCCAGCGagaauguccucaccUGCCu -3'
miRNA:   3'- aGUGcUUGA-----------ACGCGAGGUCGU--------------GCGGc -5'
23575 5' -55.7 NC_005261.1 + 122449 0.66 0.884241
Target:  5'- gCGCGGGCg-GCGCccgCCAGCG-GCCu -3'
miRNA:   3'- aGUGCUUGaaCGCGa--GGUCGUgCGGc -5'
23575 5' -55.7 NC_005261.1 + 84511 0.66 0.884241
Target:  5'- -uGCGGGC--GCGC-CgCAGCugGCCGc -3'
miRNA:   3'- agUGCUUGaaCGCGaG-GUCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 121342 0.66 0.897799
Target:  5'- ---aGAGCgggUGCGC-CCGGC-CGCUGu -3'
miRNA:   3'- agugCUUGa--ACGCGaGGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 82372 0.66 0.891136
Target:  5'- gUCGUGGACUUGgucCGCgCCGGCGCGgaCCGg -3'
miRNA:   3'- -AGUGCUUGAAC---GCGaGGUCGUGC--GGC- -5'
23575 5' -55.7 NC_005261.1 + 101025 0.66 0.884241
Target:  5'- gCGgGAGCcacaguaGCGCcgCCAGCAgCGCCGc -3'
miRNA:   3'- aGUgCUUGaa-----CGCGa-GGUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 54657 0.66 0.877119
Target:  5'- -gGCGGccGCggGCGCcgCgGGCACGCCc -3'
miRNA:   3'- agUGCU--UGaaCGCGa-GgUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 31254 0.66 0.891136
Target:  5'- aCGCGG---UGCGCggCGcGCGCGCCGa -3'
miRNA:   3'- aGUGCUugaACGCGagGU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 18655 0.66 0.897799
Target:  5'- cCACGGuCUcGCGCUCgCAGCGCauccacuugcgGCCc -3'
miRNA:   3'- aGUGCUuGAaCGCGAG-GUCGUG-----------CGGc -5'
23575 5' -55.7 NC_005261.1 + 61433 0.66 0.897799
Target:  5'- aCAgGAagcGCUcGCGCggcgCCAGCgcgggggcguccGCGCCGa -3'
miRNA:   3'- aGUgCU---UGAaCGCGa---GGUCG------------UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 74689 0.66 0.877119
Target:  5'- -aGCGGGCacgGCGCgCgGGCAgGCCGc -3'
miRNA:   3'- agUGCUUGaa-CGCGaGgUCGUgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.