miRNA display CGI


Results 21 - 40 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 31254 0.66 0.891136
Target:  5'- aCGCGG---UGCGCggCGcGCGCGCCGa -3'
miRNA:   3'- aGUGCUugaACGCGagGU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 119050 0.66 0.879995
Target:  5'- -gGCGAcugcgcccggcagcuGCUUcGCGUgauccgCCGGCugGCCGu -3'
miRNA:   3'- agUGCU---------------UGAA-CGCGa-----GGUCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 81722 0.66 0.891136
Target:  5'- aCGCGGccACUUGCGCaaacgcgCCugaGGCGCGCa- -3'
miRNA:   3'- aGUGCU--UGAACGCGa------GG---UCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 41630 0.66 0.897799
Target:  5'- cCACGcGCgacGUGCUgCGGCagaGCGCCGc -3'
miRNA:   3'- aGUGCuUGaa-CGCGAgGUCG---UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 83146 0.66 0.891136
Target:  5'- gUCGCGGACgcgagucUGCGCaugccUUCGGCG-GCCGa -3'
miRNA:   3'- -AGUGCUUGa------ACGCG-----AGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 70776 0.66 0.897799
Target:  5'- aCGCGGGCgugcggGCGgaCCGGCugcccuuuggGCGCUGg -3'
miRNA:   3'- aGUGCUUGaa----CGCgaGGUCG----------UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 96282 0.66 0.882128
Target:  5'- cCACaAGCUaaagugccgcgUGCGCUCCAGCGagaauguccucaccUGCCu -3'
miRNA:   3'- aGUGcUUGA-----------ACGCGAGGUCGU--------------GCGGc -5'
23575 5' -55.7 NC_005261.1 + 133102 0.66 0.877119
Target:  5'- gCGCGAGCgccgGCGggCCGccCGCGCCGa -3'
miRNA:   3'- aGUGCUUGaa--CGCgaGGUc-GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 70817 0.66 0.884241
Target:  5'- cCGCGGGCgcugcuggcgGCGCUggucCUGGCGCGCgCGg -3'
miRNA:   3'- aGUGCUUGaa--------CGCGA----GGUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 14276 0.66 0.884241
Target:  5'- cUCGCgGAGCggGCGCUgC-GCugGCUGu -3'
miRNA:   3'- -AGUG-CUUGaaCGCGAgGuCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 63967 0.66 0.877841
Target:  5'- cCGCGGACgcgcGCGCgcgaaugggacguacUCGGCGCGCCc -3'
miRNA:   3'- aGUGCUUGaa--CGCGa--------------GGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 126217 0.66 0.877119
Target:  5'- gUCGCGGGCgaGCGCUUCAcggaggacuGCuucgaGCCGa -3'
miRNA:   3'- -AGUGCUUGaaCGCGAGGU---------CGug---CGGC- -5'
23575 5' -55.7 NC_005261.1 + 121342 0.66 0.897799
Target:  5'- ---aGAGCgggUGCGC-CCGGC-CGCUGu -3'
miRNA:   3'- agugCUUGa--ACGCGaGGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 61433 0.66 0.897799
Target:  5'- aCAgGAagcGCUcGCGCggcgCCAGCgcgggggcguccGCGCCGa -3'
miRNA:   3'- aGUgCU---UGAaCGCGa---GGUCG------------UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 71362 0.66 0.897799
Target:  5'- cCugGAGCUUGgGCUCUcgguGGCGUGCg- -3'
miRNA:   3'- aGugCUUGAACgCGAGG----UCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 74689 0.66 0.877119
Target:  5'- -aGCGGGCacgGCGCgCgGGCAgGCCGc -3'
miRNA:   3'- agUGCUUGaa-CGCGaGgUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 7660 0.66 0.877119
Target:  5'- gCGCGGcggcGCUUcCGC-CCGGCGgGCCGc -3'
miRNA:   3'- aGUGCU----UGAAcGCGaGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 10579 0.66 0.884241
Target:  5'- cCcCGAACccGCGCgccccCCGGCGcCGCCGc -3'
miRNA:   3'- aGuGCUUGaaCGCGa----GGUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 13961 0.66 0.891136
Target:  5'- gUCGCGGcCggGCGCgCgGGCGgCGCCGc -3'
miRNA:   3'- -AGUGCUuGaaCGCGaGgUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 122449 0.66 0.884241
Target:  5'- gCGCGGGCg-GCGCccgCCAGCG-GCCu -3'
miRNA:   3'- aGUGCUUGaaCGCGa--GGUCGUgCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.