Results 41 - 60 of 597 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23575 | 5' | -55.7 | NC_005261.1 | + | 134074 | 0.74 | 0.456325 |
Target: 5'- cUCGCGcGGCUcaugUGCgaGCUCuCGGCGCGCCGg -3' miRNA: 3'- -AGUGC-UUGA----ACG--CGAG-GUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 97443 | 0.74 | 0.456325 |
Target: 5'- gCGCGggUcUGgGCUUCGGCGgCGCCGg -3' miRNA: 3'- aGUGCuuGaACgCGAGGUCGU-GCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 108908 | 0.74 | 0.465679 |
Target: 5'- -gGCGAGCgggGCGCggggucggggcCCAGCACGCCc -3' miRNA: 3'- agUGCUUGaa-CGCGa----------GGUCGUGCGGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 45642 | 0.74 | 0.474182 |
Target: 5'- cCGCGAGCggcUGCGCUCgcgcgugggcgcgCGGCGCGCgGg -3' miRNA: 3'- aGUGCUUGa--ACGCGAG-------------GUCGUGCGgC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 29925 | 0.74 | 0.475132 |
Target: 5'- gCGCGAGCUggcggacgcUGCGCUgCGGCcUGCCGc -3' miRNA: 3'- aGUGCUUGA---------ACGCGAgGUCGuGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 99012 | 0.74 | 0.475132 |
Target: 5'- gUCGCGAGCggcgGCGCggCGGCGCGCg- -3' miRNA: 3'- -AGUGCUUGaa--CGCGagGUCGUGCGgc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 13268 | 0.74 | 0.475132 |
Target: 5'- gCGCGAuuugagUGCggGCUCCAGgGCGCCGg -3' miRNA: 3'- aGUGCUuga---ACG--CGAGGUCgUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 101139 | 0.74 | 0.48468 |
Target: 5'- gCGCGAgGCUgccGCGCggCGGCGCGCCGc -3' miRNA: 3'- aGUGCU-UGAa--CGCGagGUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 37937 | 0.74 | 0.48468 |
Target: 5'- aCGCGGACUuuggggccuucUGcCGCUucgugcgccaCCGGCGCGCCGa -3' miRNA: 3'- aGUGCUUGA-----------AC-GCGA----------GGUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 134442 | 0.74 | 0.48468 |
Target: 5'- gCGCGAGCUggcggaccgcUGCGCUgCGGCcUGCCGc -3' miRNA: 3'- aGUGCUUGA----------ACGCGAgGUCGuGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 13670 | 0.74 | 0.490452 |
Target: 5'- gCGCGAGCg-GCGCgccugggagauggCCGGUACGCCGc -3' miRNA: 3'- aGUGCUUGaaCGCGa------------GGUCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 13035 | 0.74 | 0.494318 |
Target: 5'- cCACGAGCcaggGCGCggggCCGcGCGCGCCc -3' miRNA: 3'- aGUGCUUGaa--CGCGa---GGU-CGUGCGGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 21009 | 0.73 | 0.504042 |
Target: 5'- -gGCGGACUcgGCGC-CCaggcagcgGGCGCGCCGg -3' miRNA: 3'- agUGCUUGAa-CGCGaGG--------UCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 42902 | 0.73 | 0.504042 |
Target: 5'- gCACGuGACccgGCGCUCCGGgGcCGCCGg -3' miRNA: 3'- aGUGC-UUGaa-CGCGAGGUCgU-GCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 118927 | 0.73 | 0.504042 |
Target: 5'- cCGCGGGCgcgGCGCcgCgCGGCugGCCGc -3' miRNA: 3'- aGUGCUUGaa-CGCGa-G-GUCGugCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 64810 | 0.73 | 0.513849 |
Target: 5'- uUCACGcGCgcGCGCgcgCC-GCGCGCCGg -3' miRNA: 3'- -AGUGCuUGaaCGCGa--GGuCGUGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 33881 | 0.73 | 0.513849 |
Target: 5'- cUCGCGGGCggcgcUGCGCgacggCCGGC-CGCUGg -3' miRNA: 3'- -AGUGCUUGa----ACGCGa----GGUCGuGCGGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 5449 | 0.73 | 0.523733 |
Target: 5'- -gGCGAAgggGCGCUCCAGCAUGaCGg -3' miRNA: 3'- agUGCUUgaaCGCGAGGUCGUGCgGC- -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 4185 | 0.73 | 0.523733 |
Target: 5'- cCGCGAGCUUcGCGCUCUgcAGcCAgGCCa -3' miRNA: 3'- aGUGCUUGAA-CGCGAGG--UC-GUgCGGc -5' |
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23575 | 5' | -55.7 | NC_005261.1 | + | 7706 | 0.73 | 0.523733 |
Target: 5'- -gACGAGCgggcGCGCUUCGGCcaGCGCCu -3' miRNA: 3'- agUGCUUGaa--CGCGAGGUCG--UGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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