miRNA display CGI


Results 41 - 60 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 10529 0.68 0.829915
Target:  5'- cCGCGGcgcGCUcgcUGuCGCccCCGGCGCGCCu -3'
miRNA:   3'- aGUGCU---UGA---AC-GCGa-GGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 10579 0.66 0.884241
Target:  5'- cCcCGAACccGCGCgccccCCGGCGcCGCCGc -3'
miRNA:   3'- aGuGCUUGaaCGCGa----GGUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 11052 0.66 0.904226
Target:  5'- aCuCGGGCgccgcccagGCGCcgCCAGCGCGUCu -3'
miRNA:   3'- aGuGCUUGaa-------CGCGa-GGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 11527 0.67 0.84646
Target:  5'- aCGCGAACcaGcCGCuUCCcGCAcCGCCGg -3'
miRNA:   3'- aGUGCUUGaaC-GCG-AGGuCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 11771 0.66 0.910415
Target:  5'- cCGCGAgGCgaGCGCgcuggCgCGGCugGCCu -3'
miRNA:   3'- aGUGCU-UGaaCGCGa----G-GUCGugCGGc -5'
23575 5' -55.7 NC_005261.1 + 11948 0.72 0.584345
Target:  5'- cCGCGGcggcucgcccgGCgcGCGCUCCAGCGCagcaGCCGc -3'
miRNA:   3'- aGUGCU-----------UGaaCGCGAGGUCGUG----CGGC- -5'
23575 5' -55.7 NC_005261.1 + 12325 0.71 0.615212
Target:  5'- -gGCGGGCgcGCGCUuggCCGGCGCgGCCGc -3'
miRNA:   3'- agUGCUUGaaCGCGA---GGUCGUG-CGGC- -5'
23575 5' -55.7 NC_005261.1 + 13035 0.74 0.494318
Target:  5'- cCACGAGCcaggGCGCggggCCGcGCGCGCCc -3'
miRNA:   3'- aGUGCUUGaa--CGCGa---GGU-CGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 13268 0.74 0.475132
Target:  5'- gCGCGAuuugagUGCggGCUCCAGgGCGCCGg -3'
miRNA:   3'- aGUGCUuga---ACG--CGAGGUCgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 13670 0.74 0.490452
Target:  5'- gCGCGAGCg-GCGCgccugggagauggCCGGUACGCCGc -3'
miRNA:   3'- aGUGCUUGaaCGCGa------------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 13961 0.66 0.891136
Target:  5'- gUCGCGGcCggGCGCgCgGGCGgCGCCGc -3'
miRNA:   3'- -AGUGCUuGaaCGCGaGgUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 14164 0.67 0.869774
Target:  5'- cCGCGAACggcGCGCgUCuCGGgGCGCgGg -3'
miRNA:   3'- aGUGCUUGaa-CGCG-AG-GUCgUGCGgC- -5'
23575 5' -55.7 NC_005261.1 + 14276 0.66 0.884241
Target:  5'- cUCGCgGAGCggGCGCUgC-GCugGCUGu -3'
miRNA:   3'- -AGUG-CUUGaaCGCGAgGuCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 14894 0.67 0.862212
Target:  5'- gCGCGAGCagcaGCaGCaCCAGCACGCa- -3'
miRNA:   3'- aGUGCUUGaa--CG-CGaGGUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 14971 0.68 0.794693
Target:  5'- cCugGGGCgacUGCGCggccgcgCCGGCcGCGCCc -3'
miRNA:   3'- aGugCUUGa--ACGCGa------GGUCG-UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 15311 0.69 0.776151
Target:  5'- cCGCGcuGCUcggcgUGCGCUCCA--ACGCCGu -3'
miRNA:   3'- aGUGCu-UGA-----ACGCGAGGUcgUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 15788 0.69 0.766678
Target:  5'- -gGCGGGCgccgcccGCGCggCCAGCGcCGCCa -3'
miRNA:   3'- agUGCUUGaa-----CGCGa-GGUCGU-GCGGc -5'
23575 5' -55.7 NC_005261.1 + 16057 0.66 0.891136
Target:  5'- -aGCGGGCccGCGCcgagCCGGCGCGUg- -3'
miRNA:   3'- agUGCUUGaaCGCGa---GGUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 16385 0.71 0.666805
Target:  5'- cCGCGGGC-UGCugGCgCCGGUGCGCCGc -3'
miRNA:   3'- aGUGCUUGaACG--CGaGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 16582 0.69 0.776151
Target:  5'- aCGCGGACagcccGCGCUcgCCGGCGgcggcCGCCGa -3'
miRNA:   3'- aGUGCUUGaa---CGCGA--GGUCGU-----GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.