miRNA display CGI


Results 21 - 40 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 20903 0.66 0.910415
Target:  5'- gCGCGGGCaaggaUGCGCUUgCuGCccGCGCCGg -3'
miRNA:   3'- aGUGCUUGa----ACGCGAG-GuCG--UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 72266 0.66 0.910415
Target:  5'- cCGCGAugUacuCGC-CCAGCA-GCCGg -3'
miRNA:   3'- aGUGCUugAac-GCGaGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 8104 0.66 0.910415
Target:  5'- -gGCGGACggcGCGCggCGGCuCGCCa -3'
miRNA:   3'- agUGCUUGaa-CGCGagGUCGuGCGGc -5'
23575 5' -55.7 NC_005261.1 + 84755 0.66 0.909807
Target:  5'- aCACGuuCUUGCccccguugaggccGCUCCAGUugccCGCCu -3'
miRNA:   3'- aGUGCuuGAACG-------------CGAGGUCGu---GCGGc -5'
23575 5' -55.7 NC_005261.1 + 45968 0.66 0.909807
Target:  5'- --uUGAGCaUGCGCgCCAGCucuugcagcacggGCGCCa -3'
miRNA:   3'- aguGCUUGaACGCGaGGUCG-------------UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 109883 0.66 0.906731
Target:  5'- cCGCGGGCggGCGCcCCGGgGCuacagccccuggaccGCCGg -3'
miRNA:   3'- aGUGCUUGaaCGCGaGGUCgUG---------------CGGC- -5'
23575 5' -55.7 NC_005261.1 + 65120 0.66 0.904226
Target:  5'- gCGCGGACgcggGCuuUCUGGC-CGCCGu -3'
miRNA:   3'- aGUGCUUGaa--CGcgAGGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 97111 0.66 0.904226
Target:  5'- cCACGcaggaaGCGCUCgGGCcCGCCGc -3'
miRNA:   3'- aGUGCuugaa-CGCGAGgUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 105883 0.66 0.904226
Target:  5'- cCGCGGGCccugguccGCGUcCCAGgcCACGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGaGGUC--GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 67346 0.66 0.904226
Target:  5'- gCACGGcCaUGUGCaccgCCGGCcACGCCa -3'
miRNA:   3'- aGUGCUuGaACGCGa---GGUCG-UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 58051 0.66 0.904226
Target:  5'- gCAgGAGCUggcaCGCUCgaaCGGCACGCuCGa -3'
miRNA:   3'- aGUgCUUGAac--GCGAG---GUCGUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 84752 0.66 0.904226
Target:  5'- gCGCGAGCgcuagUGCGCgCCuGCuGCGUCc -3'
miRNA:   3'- aGUGCUUGa----ACGCGaGGuCG-UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 78656 0.66 0.904226
Target:  5'- gCGCGGcacccGCUgcgGCGCg-CGcGCGCGCCGa -3'
miRNA:   3'- aGUGCU-----UGAa--CGCGagGU-CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 108079 0.66 0.904226
Target:  5'- gCGCGGcgccgcuaaggcGCgcGCGCUCCAcCGCGUCGc -3'
miRNA:   3'- aGUGCU------------UGaaCGCGAGGUcGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 133299 0.66 0.904226
Target:  5'- cCGCGGcGCggGCGCUCgCGGcCGCGgCGg -3'
miRNA:   3'- aGUGCU-UGaaCGCGAG-GUC-GUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 78702 0.66 0.904226
Target:  5'- gCGCGGuggcgGCgggGCuGCUCCAGgGCGCgCGu -3'
miRNA:   3'- aGUGCU-----UGaa-CG-CGAGGUCgUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 115570 0.66 0.904226
Target:  5'- aCuCGGGCgccgcccagGCGCcgCCAGCGCGUCu -3'
miRNA:   3'- aGuGCUUGaa-------CGCGa-GGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 69470 0.66 0.904226
Target:  5'- aCACGGcgGCUccgcgGCGCcCCGGCGggcgcuucuuccCGCCGg -3'
miRNA:   3'- aGUGCU--UGAa----CGCGaGGUCGU------------GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 95871 0.66 0.904226
Target:  5'- gUACG--UUUGCGCggCCAGCcCGCCc -3'
miRNA:   3'- aGUGCuuGAACGCGa-GGUCGuGCGGc -5'
23575 5' -55.7 NC_005261.1 + 100014 0.66 0.904226
Target:  5'- gCACGGugaGCgaggUGUugaGCagCAGCACGCCGc -3'
miRNA:   3'- aGUGCU---UGa---ACG---CGagGUCGUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.