miRNA display CGI


Results 81 - 100 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 31469 0.66 0.96854
Target:  5'- cGGCGGCCuGAGuggccgccgguGCGCGgCGGGCUcUCg -3'
miRNA:   3'- aCUGCCGG-CUCuu---------CGUGU-GCUUGA-AG- -5'
23576 3' -52.6 NC_005261.1 + 31519 0.67 0.946498
Target:  5'- gGugGGCCGcuuccuGcAGCGCugGGACg-- -3'
miRNA:   3'- aCugCCGGCu-----CuUCGUGugCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 31662 0.66 0.974897
Target:  5'- cGGCGGCCccGGGGccGGCGCGCGccGGCc-- -3'
miRNA:   3'- aCUGCCGG--CUCU--UCGUGUGC--UUGaag -5'
23576 3' -52.6 NC_005261.1 + 32006 0.67 0.950875
Target:  5'- cGGCGGCCGcgccaGGcGGC-CGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGC-----UCuUCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 33290 0.67 0.955006
Target:  5'- -cGCGGCgGAGcuuGGCGCGCGcGCggCa -3'
miRNA:   3'- acUGCCGgCUCu--UCGUGUGCuUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 33823 0.75 0.571993
Target:  5'- gGGCGGCCGGGggGCGCGggcccccuggcgcUGGGCg-- -3'
miRNA:   3'- aCUGCCGGCUCuuCGUGU-------------GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 33899 0.7 0.858891
Target:  5'- cGACGGCCGgccgcuGGAcGCGCGCGuccGCgcgUCu -3'
miRNA:   3'- aCUGCCGGC------UCUuCGUGUGCu--UGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 34100 0.69 0.874326
Target:  5'- cUGGCGGCCGAGcucGCG-GCGAACcgCg -3'
miRNA:   3'- -ACUGCCGGCUCuu-CGUgUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 34180 0.69 0.908784
Target:  5'- -cGCGGCCGAGgcGC-UGCGGcaguACUUCc -3'
miRNA:   3'- acUGCCGGCUCuuCGuGUGCU----UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 34195 0.69 0.908784
Target:  5'- gGAgGGCCG-GAGGCAgACGGcGCgUCg -3'
miRNA:   3'- aCUgCCGGCuCUUCGUgUGCU-UGaAG- -5'
23576 3' -52.6 NC_005261.1 + 34349 0.67 0.950875
Target:  5'- gGGCGGCCGAcGggGCcgggcgccGCGCGGcgccGCg-- -3'
miRNA:   3'- aCUGCCGGCU-CuuCG--------UGUGCU----UGaag -5'
23576 3' -52.6 NC_005261.1 + 34605 0.68 0.936992
Target:  5'- cGACGGCCuGGccGAcGCGCugGAGCc-- -3'
miRNA:   3'- aCUGCCGG-CU--CUuCGUGugCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 34698 0.68 0.926473
Target:  5'- cGGgGGCCGAgGAGGCGgcggaugcCGCGGACg-- -3'
miRNA:   3'- aCUgCCGGCU-CUUCGU--------GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 34788 0.79 0.406765
Target:  5'- cGGCGGCCGAccgcGAGGCGCGCGcGCg-- -3'
miRNA:   3'- aCUGCCGGCU----CUUCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 34870 0.69 0.881699
Target:  5'- -cGCGGCCGAGcugggggagcGGCGCGCgGAGCUg- -3'
miRNA:   3'- acUGCCGGCUCu---------UCGUGUG-CUUGAag -5'
23576 3' -52.6 NC_005261.1 + 35003 0.73 0.688836
Target:  5'- gGACGGCgGAGGAcUGCGCGcGCUUCc -3'
miRNA:   3'- aCUGCCGgCUCUUcGUGUGCuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 35242 0.69 0.895732
Target:  5'- gUGGCGGCCGccguGucGCGCGCGGcgGCg-- -3'
miRNA:   3'- -ACUGCCGGCu---CuuCGUGUGCU--UGaag -5'
23576 3' -52.6 NC_005261.1 + 35405 0.66 0.962547
Target:  5'- -cGCGGCgCGAGGcgcagaccGGCGCGCGGcgGCUg- -3'
miRNA:   3'- acUGCCG-GCUCU--------UCGUGUGCU--UGAag -5'
23576 3' -52.6 NC_005261.1 + 35549 0.68 0.936992
Target:  5'- cGACGGCCGcGgcGgACGCGGcGCUg- -3'
miRNA:   3'- aCUGCCGGCuCuuCgUGUGCU-UGAag -5'
23576 3' -52.6 NC_005261.1 + 35708 0.74 0.667872
Target:  5'- aGGCGGCCaAGcuGCACGCGGACc-- -3'
miRNA:   3'- aCUGCCGGcUCuuCGUGUGCUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.