miRNA display CGI


Results 61 - 80 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 26586 0.7 0.866721
Target:  5'- gGAgGGCUGGGAGGCgGCgGCGGGCggCg -3'
miRNA:   3'- aCUgCCGGCUCUUCG-UG-UGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 26678 0.71 0.807587
Target:  5'- cGuCGGCCGGGcAGGCgguccGCAUGAACgcgUCg -3'
miRNA:   3'- aCuGCCGGCUC-UUCG-----UGUGCUUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 26931 0.68 0.914934
Target:  5'- cGGCGGCgGAGGcAGCGCgGCGGAaggCg -3'
miRNA:   3'- aCUGCCGgCUCU-UCGUG-UGCUUgaaG- -5'
23576 3' -52.6 NC_005261.1 + 27665 0.71 0.82546
Target:  5'- cGugGGCCGuGGAGCGCGgGuguGCg-- -3'
miRNA:   3'- aCugCCGGCuCUUCGUGUgCu--UGaag -5'
23576 3' -52.6 NC_005261.1 + 27728 0.73 0.719881
Target:  5'- cGACGGCCGuGAcGCugGCcAGCUUg -3'
miRNA:   3'- aCUGCCGGCuCUuCGugUGcUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 28414 0.67 0.941394
Target:  5'- cGGCGGCCGccgcggcGGAAGCgGCGCcGGCcgUCg -3'
miRNA:   3'- aCUGCCGGC-------UCUUCG-UGUGcUUGa-AG- -5'
23576 3' -52.6 NC_005261.1 + 28483 0.69 0.895732
Target:  5'- cGGCGGCCGGGAGcCGCAUucGCa-- -3'
miRNA:   3'- aCUGCCGGCUCUUcGUGUGcuUGaag -5'
23576 3' -52.6 NC_005261.1 + 28561 0.72 0.760102
Target:  5'- cGACGcggcccGCCGGgccGAGGCGCGCGAGCg-- -3'
miRNA:   3'- aCUGC------CGGCU---CUUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 28762 0.67 0.958517
Target:  5'- -cGCGGCCGGGGgcgccugGGCcgcgGCGCGGGCg-- -3'
miRNA:   3'- acUGCCGGCUCU-------UCG----UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 28804 0.69 0.881699
Target:  5'- cGGCGGUCGGGuuucGGUGCGCGggUgcgCg -3'
miRNA:   3'- aCUGCCGGCUCu---UCGUGUGCuuGaa-G- -5'
23576 3' -52.6 NC_005261.1 + 29420 0.73 0.719881
Target:  5'- cGGCGGCCGcGggGCcCGCGgccGugUUCg -3'
miRNA:   3'- aCUGCCGGCuCuuCGuGUGC---UugAAG- -5'
23576 3' -52.6 NC_005261.1 + 29840 0.73 0.699247
Target:  5'- -cGCGGCUGcuGGAGCGCGCGGGCg-- -3'
miRNA:   3'- acUGCCGGCu-CUUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 29924 0.69 0.881699
Target:  5'- cGGCGGCCGucuGGGAcccguGCAgGCGAGCg-- -3'
miRNA:   3'- aCUGCCGGC---UCUU-----CGUgUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 30193 0.69 0.872823
Target:  5'- aGGCGGCCGccgcgcuGGAGGCggccgcgcuggcgGCGCGAACc-- -3'
miRNA:   3'- aCUGCCGGC-------UCUUCG-------------UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 30242 0.66 0.974897
Target:  5'- cGACGGCgGGcuGGAGCAgACGAuccgccACUg- -3'
miRNA:   3'- aCUGCCGgCU--CUUCGUgUGCU------UGAag -5'
23576 3' -52.6 NC_005261.1 + 30327 0.66 0.962547
Target:  5'- --gUGGCCGAGGccgcGGC-CGCGGACa-- -3'
miRNA:   3'- acuGCCGGCUCU----UCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 30342 0.66 0.975944
Target:  5'- cUGGCGGCCGcgcucgcggcccugaAGGccGGCGCGcCGGGCg-- -3'
miRNA:   3'- -ACUGCCGGC---------------UCU--UCGUGU-GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 30418 0.67 0.941871
Target:  5'- cGGCGGCCGcuAGGGccgccGCGCGCGAGg--- -3'
miRNA:   3'- aCUGCCGGC--UCUU-----CGUGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 30834 0.71 0.816613
Target:  5'- cUGGCGGCCGGGcucuGGCcguucguggACGCGGGCg-- -3'
miRNA:   3'- -ACUGCCGGCUCu---UCG---------UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 31131 0.67 0.946498
Target:  5'- -cGCGGCUG-GggGCGCuguuCGAcugccACUUCg -3'
miRNA:   3'- acUGCCGGCuCuuCGUGu---GCU-----UGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.