miRNA display CGI


Results 41 - 60 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 17736 0.71 0.789035
Target:  5'- -aGCGGCgCucGGAGCGgGCGGACUUCu -3'
miRNA:   3'- acUGCCG-GcuCUUCGUgUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 18340 0.71 0.816613
Target:  5'- ---aGGCCGGGgcGCAgCACGAGCgacgUCc -3'
miRNA:   3'- acugCCGGCUCuuCGU-GUGCUUGa---AG- -5'
23576 3' -52.6 NC_005261.1 + 18370 0.72 0.769881
Target:  5'- cGGCGGUCaGGGAGCGCACGG---UCa -3'
miRNA:   3'- aCUGCCGGcUCUUCGUGUGCUugaAG- -5'
23576 3' -52.6 NC_005261.1 + 18971 0.69 0.895732
Target:  5'- gUGGCGG-UGGGgcGCGCACGAAagUCa -3'
miRNA:   3'- -ACUGCCgGCUCuuCGUGUGCUUgaAG- -5'
23576 3' -52.6 NC_005261.1 + 19361 0.68 0.920831
Target:  5'- cGGUGGCCGAGGccagGGC-CGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGCUCU----UCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 19616 0.68 0.936992
Target:  5'- cGGCGGCCaGGGcaacGGCcgacaGCGCGAGCUcCg -3'
miRNA:   3'- aCUGCCGGcUCU----UCG-----UGUGCUUGAaG- -5'
23576 3' -52.6 NC_005261.1 + 19882 0.67 0.955006
Target:  5'- --cCGGCCGAGAGGC-CGagGAGCa-- -3'
miRNA:   3'- acuGCCGGCUCUUCGuGUg-CUUGaag -5'
23576 3' -52.6 NC_005261.1 + 20318 0.7 0.866721
Target:  5'- cGACuGGgccCCGAGccGCGCACGAGCg-- -3'
miRNA:   3'- aCUG-CC---GGCUCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 21534 0.7 0.850843
Target:  5'- cUGGCGGCCGAugagcGAGGCGCucGCGAu---- -3'
miRNA:   3'- -ACUGCCGGCU-----CUUCGUG--UGCUugaag -5'
23576 3' -52.6 NC_005261.1 + 21587 0.66 0.962547
Target:  5'- cGGCGGC----GGGCGCGCGGGCcUCg -3'
miRNA:   3'- aCUGCCGgcucUUCGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 22468 0.68 0.93186
Target:  5'- cGACGccGCCGAGAcggaGGCcgacgacguguGCGCGAACcUCu -3'
miRNA:   3'- aCUGC--CGGCUCU----UCG-----------UGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 22780 0.66 0.972135
Target:  5'- cGA-GGCgGAGGAGUccggccgcgaGCGCGAGCUc- -3'
miRNA:   3'- aCUgCCGgCUCUUCG----------UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 23005 0.67 0.946498
Target:  5'- gGGgGGCCcGGAGGCGgccCGCGAACg-- -3'
miRNA:   3'- aCUgCCGGcUCUUCGU---GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 23174 0.69 0.895732
Target:  5'- aGGCGcGCCG-GggGCGacaGCGAGCg-- -3'
miRNA:   3'- aCUGC-CGGCuCuuCGUg--UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 24123 0.85 0.169383
Target:  5'- cGGCGGCCGAGAGGaACGCGAACa-- -3'
miRNA:   3'- aCUGCCGGCUCUUCgUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 24975 0.7 0.842583
Target:  5'- cGaACGGCaUGAGcccGCGCGCGAACUUg -3'
miRNA:   3'- aC-UGCCG-GCUCuu-CGUGUGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 25064 0.71 0.807587
Target:  5'- aUGACGGCC-AGGAGCAgGCGcuCggCg -3'
miRNA:   3'- -ACUGCCGGcUCUUCGUgUGCuuGaaG- -5'
23576 3' -52.6 NC_005261.1 + 25268 0.68 0.920831
Target:  5'- gUGGCGGCCGccguGGAcAGCGCgGCGAAg-UCg -3'
miRNA:   3'- -ACUGCCGGC----UCU-UCGUG-UGCUUgaAG- -5'
23576 3' -52.6 NC_005261.1 + 26116 0.7 0.858891
Target:  5'- -aGCGGCCGGGuAAGCAgGCGcGCg-- -3'
miRNA:   3'- acUGCCGGCUC-UUCGUgUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 26310 0.66 0.974897
Target:  5'- cGACugcaGGCCGAGc-GCGCACaGGGCggCg -3'
miRNA:   3'- aCUG----CCGGCUCuuCGUGUG-CUUGaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.