miRNA display CGI


Results 21 - 40 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 8078 0.67 0.958895
Target:  5'- cUGACGGUgGAGGAcgugguGCGCucgGCGGACggCg -3'
miRNA:   3'- -ACUGCCGgCUCUU------CGUG---UGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 8357 0.71 0.806675
Target:  5'- aUGGCGGCCGAGAgcaacaucgugauGGCcgacgucgcgguGCugGAGCg-- -3'
miRNA:   3'- -ACUGCCGGCUCU-------------UCG------------UGugCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 8949 0.71 0.798391
Target:  5'- gGGCGGgCGGGGcGGCGCGgGGGCUUg -3'
miRNA:   3'- aCUGCCgGCUCU-UCGUGUgCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 9397 0.67 0.950875
Target:  5'- gUGGCGGCC-AGc--CGCGCGAGCgUCa -3'
miRNA:   3'- -ACUGCCGGcUCuucGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 9845 0.69 0.888836
Target:  5'- -uGCGGCgCGAgGAAGCG-AUGGACUUCu -3'
miRNA:   3'- acUGCCG-GCU-CUUCGUgUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 11692 0.68 0.936992
Target:  5'- cGGCGGCgCGuggccGAGGCGCgGCGGGCg-- -3'
miRNA:   3'- aCUGCCG-GCu----CUUCGUG-UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 12578 0.72 0.750203
Target:  5'- cGG-GGCCGAGAGGgGCGCcuagcggaggauGGACUUCa -3'
miRNA:   3'- aCUgCCGGCUCUUCgUGUG------------CUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 12772 0.67 0.946498
Target:  5'- cGGCGGUggCGGGggGCucgucgGCGAGCUcgUCg -3'
miRNA:   3'- aCUGCCG--GCUCuuCGug----UGCUUGA--AG- -5'
23576 3' -52.6 NC_005261.1 + 13122 0.69 0.902382
Target:  5'- cGGCGGCCGcGggGCGCGUGugg-UCg -3'
miRNA:   3'- aCUGCCGGCuCuuCGUGUGCuugaAG- -5'
23576 3' -52.6 NC_005261.1 + 13674 0.67 0.941871
Target:  5'- gGGgGGgCGcGggGCGCGCGGGCg-- -3'
miRNA:   3'- aCUgCCgGCuCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 13963 0.7 0.850843
Target:  5'- -cGCGGCCG---GGCGCGCGGGCggCg -3'
miRNA:   3'- acUGCCGGCucuUCGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 14030 0.66 0.965967
Target:  5'- cGAUGGCCaGcGggGCcAUGCGAGCggUCc -3'
miRNA:   3'- aCUGCCGG-CuCuuCG-UGUGCUUGa-AG- -5'
23576 3' -52.6 NC_005261.1 + 14099 0.69 0.874326
Target:  5'- -cGCGGUCGucGAGGCAgACGGGCgUCg -3'
miRNA:   3'- acUGCCGGCu-CUUCGUgUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 14528 0.68 0.93186
Target:  5'- cUGAUGGCCGAGuacgcGGCccACGCuGAGCg-- -3'
miRNA:   3'- -ACUGCCGGCUCu----UCG--UGUG-CUUGaag -5'
23576 3' -52.6 NC_005261.1 + 15537 0.67 0.955006
Target:  5'- cGGCGGCgCGGcgauGGAGCAgGCGcAGCUg- -3'
miRNA:   3'- aCUGCCG-GCU----CUUCGUgUGC-UUGAag -5'
23576 3' -52.6 NC_005261.1 + 15687 0.69 0.874326
Target:  5'- -uGCGGUgGAGAAGUACAUGuACUa- -3'
miRNA:   3'- acUGCCGgCUCUUCGUGUGCuUGAag -5'
23576 3' -52.6 NC_005261.1 + 16261 0.66 0.969161
Target:  5'- gGGCGGCgCuGGAgcgcGGCACgGCGAGCUg- -3'
miRNA:   3'- aCUGCCG-GcUCU----UCGUG-UGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 16369 0.66 0.974897
Target:  5'- -uGCGGCuCGgcGGGAGC-CGCGGGCUg- -3'
miRNA:   3'- acUGCCG-GC--UCUUCGuGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 17483 0.69 0.888836
Target:  5'- gGGCGcGCCGGGggGUccuagacgcggaGCAUGGGCUc- -3'
miRNA:   3'- aCUGC-CGGCUCuuCG------------UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 17651 0.68 0.931333
Target:  5'- cGACGGCCacGAcGCugACGAugacgggGCUUCc -3'
miRNA:   3'- aCUGCCGGcuCUuCGugUGCU-------UGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.