miRNA display CGI


Results 21 - 40 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 128455 0.69 0.874326
Target:  5'- cGGCGGUCGc-GAGCACgACGAGCa-- -3'
miRNA:   3'- aCUGCCGGCucUUCGUG-UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 128146 0.67 0.941871
Target:  5'- cGACGGUCGccGggGC-CGCGGGCc-- -3'
miRNA:   3'- aCUGCCGGCu-CuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 128069 0.67 0.950875
Target:  5'- aUGGCGGgCGGGcGGGCGaGCGAGCg-- -3'
miRNA:   3'- -ACUGCCgGCUC-UUCGUgUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 127854 0.68 0.936992
Target:  5'- gGGCGGUCGcGgcGCcaggGCACGAGCgggagUCg -3'
miRNA:   3'- aCUGCCGGCuCuuCG----UGUGCUUGa----AG- -5'
23576 3' -52.6 NC_005261.1 + 127692 0.69 0.895732
Target:  5'- aGGCGcGCCG-GggGCGacaGCGAGCg-- -3'
miRNA:   3'- aCUGC-CGGCuCuuCGUg--UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 127645 0.77 0.46228
Target:  5'- cGGCGgcGCCGGGggGCGCGCGGG-UUCg -3'
miRNA:   3'- aCUGC--CGGCUCuuCGUGUGCUUgAAG- -5'
23576 3' -52.6 NC_005261.1 + 127523 0.67 0.946498
Target:  5'- gGGgGGCCcGGAGGCGgccCGCGAACg-- -3'
miRNA:   3'- aCUgCCGGcUCUUCGU---GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 127383 0.67 0.950448
Target:  5'- uUGGCGGCggCGAGGAgcccggcgcccucGCACACGAGg--- -3'
miRNA:   3'- -ACUGCCG--GCUCUU-------------CGUGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 126941 0.68 0.936992
Target:  5'- -cGCGGCC-AGggGCGC-CGGGCg-- -3'
miRNA:   3'- acUGCCGGcUCuuCGUGuGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 125897 0.66 0.974897
Target:  5'- cGGCGGCCGcgccGGccAAGCGCGCGcccgccGGCUa- -3'
miRNA:   3'- aCUGCCGGC----UC--UUCGUGUGC------UUGAag -5'
23576 3' -52.6 NC_005261.1 + 125747 0.67 0.950875
Target:  5'- aGGgGGCCGGGGccagGGCugcCGCGGGCUc- -3'
miRNA:   3'- aCUgCCGGCUCU----UCGu--GUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 125468 0.66 0.965967
Target:  5'- gGGC-GCCGAGAAaGC-CGCGGGCg-- -3'
miRNA:   3'- aCUGcCGGCUCUU-CGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 125367 0.68 0.920831
Target:  5'- cGcCGGgCaGAGggGCGCugGAACg-- -3'
miRNA:   3'- aCuGCCgG-CUCuuCGUGugCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 125214 0.69 0.874326
Target:  5'- cGugGuGCUGGGggGCGCGCucGGGCUc- -3'
miRNA:   3'- aCugC-CGGCUCuuCGUGUG--CUUGAag -5'
23576 3' -52.6 NC_005261.1 + 123160 0.71 0.798391
Target:  5'- cGAgGGCgGGGcGGGCGCGCGGGCg-- -3'
miRNA:   3'- aCUgCCGgCUC-UUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 123013 0.68 0.920831
Target:  5'- -cGCGGCCGuGgcGUcCGCGAGCgUCg -3'
miRNA:   3'- acUGCCGGCuCuuCGuGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 122910 0.66 0.969161
Target:  5'- gGACGGCguuGGAGCGCAcgcCGAGCa-- -3'
miRNA:   3'- aCUGCCGgcuCUUCGUGU---GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 122855 0.67 0.946498
Target:  5'- cGGCGgcGCCGAG-GGCGC-CGAGCg-- -3'
miRNA:   3'- aCUGC--CGGCUCuUCGUGuGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 122633 0.66 0.974897
Target:  5'- cGGCGaGCgCGAGGcccGGCGCGCGuACg-- -3'
miRNA:   3'- aCUGC-CG-GCUCU---UCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 122489 0.72 0.769881
Target:  5'- aGGCGGUCGGccuGCGCGCGGACg-- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGUGCUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.