miRNA display CGI


Results 21 - 40 of 352 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 64765 0.77 0.491492
Target:  5'- -cGCGGCCcagGGGggGCGCGCGGACg-- -3'
miRNA:   3'- acUGCCGG---CUCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 131587 0.76 0.521529
Target:  5'- cGACGGCCGAGGccuacGCGCGCGcGCg-- -3'
miRNA:   3'- aCUGCCGGCUCUu----CGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 65211 0.76 0.521529
Target:  5'- cGACGGCUGGGAcGCGCugGggUgggCg -3'
miRNA:   3'- aCUGCCGGCUCUuCGUGugCuuGaa-G- -5'
23576 3' -52.6 NC_005261.1 + 70461 0.76 0.531702
Target:  5'- gGGCGGCCGGGGgcGGCGCcuCGGACggCg -3'
miRNA:   3'- aCUGCCGGCUCU--UCGUGu-GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 69991 0.76 0.552252
Target:  5'- gGACGGCCGAGuacccGCGCGCGA---UCg -3'
miRNA:   3'- aCUGCCGGCUCuu---CGUGUGCUugaAG- -5'
23576 3' -52.6 NC_005261.1 + 33823 0.75 0.571993
Target:  5'- gGGCGGCCGGGggGCGCGggcccccuggcgcUGGGCg-- -3'
miRNA:   3'- aCUGCCGGCUCuuCGUGU-------------GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 38372 0.75 0.583499
Target:  5'- gGGCGGCCGGGAAGCgGCACcucguGCUg- -3'
miRNA:   3'- aCUGCCGGCUCUUCG-UGUGcu---UGAag -5'
23576 3' -52.6 NC_005261.1 + 85197 0.75 0.604529
Target:  5'- cGACGGCUGccccggcgccgcGGAAGCGCugGCGAGCUg- -3'
miRNA:   3'- aCUGCCGGC------------UCUUCGUG--UGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 121547 0.74 0.625646
Target:  5'- cGACGGCgCG-GucGCcuACACGGACUUCa -3'
miRNA:   3'- aCUGCCG-GCuCuuCG--UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 47699 0.74 0.636216
Target:  5'- cGGCGGCgGGGAugcGCGCGCGGAUg-- -3'
miRNA:   3'- aCUGCCGgCUCUu--CGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 111493 0.74 0.646783
Target:  5'- aGAUGGCaagCGAGggGCGgACGAGCg-- -3'
miRNA:   3'- aCUGCCG---GCUCuuCGUgUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 78026 0.74 0.646783
Target:  5'- -cGCGG-CGGGAGcgcGCGCGCGGACUUCu -3'
miRNA:   3'- acUGCCgGCUCUU---CGUGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 70925 0.74 0.646783
Target:  5'- cGGCGGCCGAcGGcGGCGCGCGcGCggCg -3'
miRNA:   3'- aCUGCCGGCU-CU-UCGUGUGCuUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 35708 0.74 0.667872
Target:  5'- aGGCGGCCaAGcuGCACGCGGACc-- -3'
miRNA:   3'- aCUGCCGGcUCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 2628 0.73 0.678374
Target:  5'- gGGCGGCaUGGGGcccAGCACGCGGGCg-- -3'
miRNA:   3'- aCUGCCG-GCUCU---UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 112809 0.73 0.678374
Target:  5'- -cACGGCCGGGGAcgcGCugACGGGCUcCa -3'
miRNA:   3'- acUGCCGGCUCUU---CGugUGCUUGAaG- -5'
23576 3' -52.6 NC_005261.1 + 36385 0.73 0.678374
Target:  5'- aGGCGGCCGGcGGGCGCGCGGc---- -3'
miRNA:   3'- aCUGCCGGCUcUUCGUGUGCUugaag -5'
23576 3' -52.6 NC_005261.1 + 107145 0.73 0.678374
Target:  5'- gGGCGGCaUGGGGcccAGCACGCGGGCg-- -3'
miRNA:   3'- aCUGCCG-GCUCU---UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 44279 0.73 0.687792
Target:  5'- cGACGGCCGAccgcccgGAGGCGgcgccCGCGGACggCg -3'
miRNA:   3'- aCUGCCGGCU-------CUUCGU-----GUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 35003 0.73 0.688836
Target:  5'- gGACGGCgGAGGAcUGCGCGcGCUUCc -3'
miRNA:   3'- aCUGCCGgCUCUUcGUGUGCuUGAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.