miRNA display CGI


Results 21 - 40 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 6758 0.66 0.965636
Target:  5'- cGACGGCgcgcucgcggaggCGGGAGGCGCccGCGAggcGCggCg -3'
miRNA:   3'- aCUGCCG-------------GCUCUUCGUG--UGCU---UGaaG- -5'
23576 3' -52.6 NC_005261.1 + 87290 0.66 0.965967
Target:  5'- -cACGGCCGcguAGAAGCAgGgGAGCc-- -3'
miRNA:   3'- acUGCCGGC---UCUUCGUgUgCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 39586 0.66 0.969161
Target:  5'- gGGgGGCCGAGGAGUGgCugGAcgACg-- -3'
miRNA:   3'- aCUgCCGGCUCUUCGU-GugCU--UGaag -5'
23576 3' -52.6 NC_005261.1 + 102270 0.66 0.974897
Target:  5'- -aGCGGCCGAGcGGCcugGC-CGGGCUc- -3'
miRNA:   3'- acUGCCGGCUCuUCG---UGuGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 21587 0.66 0.962547
Target:  5'- cGGCGGC----GGGCGCGCGGGCcUCg -3'
miRNA:   3'- aCUGCCGgcucUUCGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 120958 0.66 0.972135
Target:  5'- gGGCGGUCG-GggGUGCACucGCUc- -3'
miRNA:   3'- aCUGCCGGCuCuuCGUGUGcuUGAag -5'
23576 3' -52.6 NC_005261.1 + 67298 0.66 0.974897
Target:  5'- cGGCGGaCGcGcAGGCGCugGAGCUc- -3'
miRNA:   3'- aCUGCCgGCuC-UUCGUGugCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 109798 0.66 0.969161
Target:  5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 26310 0.66 0.974897
Target:  5'- cGACugcaGGCCGAGc-GCGCACaGGGCggCg -3'
miRNA:   3'- aCUG----CCGGCUCuuCGUGUG-CUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 57283 0.66 0.965967
Target:  5'- cGAaGGCCGAGuaccuGCGCAgCGGGCg-- -3'
miRNA:   3'- aCUgCCGGCUCuu---CGUGU-GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 74675 0.66 0.965636
Target:  5'- aUGcCGGCCGcgccagcGGGcacGGCGCGCGGGCa-- -3'
miRNA:   3'- -ACuGCCGGC-------UCU---UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 88925 0.66 0.974897
Target:  5'- cGAgGGCUGcGcGGCGCucaccgccGCGGGCUUCu -3'
miRNA:   3'- aCUgCCGGCuCuUCGUG--------UGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 37549 0.66 0.974897
Target:  5'- -cGCGGCCGcGGugcacucGCGCGCGAACc-- -3'
miRNA:   3'- acUGCCGGCuCUu------CGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 68853 0.66 0.968852
Target:  5'- gGACGGCgguaucuCGAGGuccAGCGCGCGcGCg-- -3'
miRNA:   3'- aCUGCCG-------GCUCU---UCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 16369 0.66 0.974897
Target:  5'- -uGCGGCuCGgcGGGAGC-CGCGGGCUg- -3'
miRNA:   3'- acUGCCG-GC--UCUUCGuGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 37239 0.66 0.974897
Target:  5'- -cGCGGCUGGcGGAGCGCgGCGAcgcGCUg- -3'
miRNA:   3'- acUGCCGGCU-CUUCGUG-UGCU---UGAag -5'
23576 3' -52.6 NC_005261.1 + 104355 0.66 0.974897
Target:  5'- gUGACGcGCCG-GAGGCGgGCGGc---- -3'
miRNA:   3'- -ACUGC-CGGCuCUUCGUgUGCUugaag -5'
23576 3' -52.6 NC_005261.1 + 106240 0.66 0.974897
Target:  5'- cGGCGGCaCGGGcaccgcGGUGCGCGGGCc-- -3'
miRNA:   3'- aCUGCCG-GCUCu-----UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 91264 0.66 0.972135
Target:  5'- gGGCGGCgGcAGcGGCgacgGCGCGGACUg- -3'
miRNA:   3'- aCUGCCGgC-UCuUCG----UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 5141 0.66 0.972135
Target:  5'- uUGACGGCgGccuugcgcucgaAGAAGCugACGuACUc- -3'
miRNA:   3'- -ACUGCCGgC------------UCUUCGugUGCuUGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.