miRNA display CGI


Results 21 - 40 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 109798 0.66 0.969161
Target:  5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 98809 0.66 0.974897
Target:  5'- gGACGcGCCGGGGgacgggguGGCcGCugGGGCUcgggUCg -3'
miRNA:   3'- aCUGC-CGGCUCU--------UCG-UGugCUUGA----AG- -5'
23576 3' -52.6 NC_005261.1 + 110390 0.66 0.972135
Target:  5'- cGACGGa-GAGAGGCugGCuGGCUc- -3'
miRNA:   3'- aCUGCCggCUCUUCGugUGcUUGAag -5'
23576 3' -52.6 NC_005261.1 + 31662 0.66 0.974897
Target:  5'- cGGCGGCCccGGGGccGGCGCGCGccGGCc-- -3'
miRNA:   3'- aCUGCCGG--CUCU--UCGUGUGC--UUGaag -5'
23576 3' -52.6 NC_005261.1 + 99306 0.66 0.969161
Target:  5'- cGGCcGCCGGcuuGGCGCGCGGGCcgCg -3'
miRNA:   3'- aCUGcCGGCUcu-UCGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 106240 0.66 0.974897
Target:  5'- cGGCGGCaCGGGcaccgcGGUGCGCGGGCc-- -3'
miRNA:   3'- aCUGCCG-GCUCu-----UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 16369 0.66 0.974897
Target:  5'- -uGCGGCuCGgcGGGAGC-CGCGGGCUg- -3'
miRNA:   3'- acUGCCG-GC--UCUUCGuGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 74675 0.66 0.965636
Target:  5'- aUGcCGGCCGcgccagcGGGcacGGCGCGCGGGCa-- -3'
miRNA:   3'- -ACuGCCGGC-------UCU---UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 134859 0.66 0.975944
Target:  5'- cUGGCGGCCGcgcucgcggcccugaAGGccGGCGCGcCGGGCg-- -3'
miRNA:   3'- -ACUGCCGGC---------------UCU--UCGUGU-GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 104982 0.66 0.965967
Target:  5'- cGACGGCCGgcgGGAuGGCGCGgGGAg--- -3'
miRNA:   3'- aCUGCCGGC---UCU-UCGUGUgCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 85665 0.66 0.965967
Target:  5'- cGACGG-CGAGcucGCGCGCGAgucGCUa- -3'
miRNA:   3'- aCUGCCgGCUCuu-CGUGUGCU---UGAag -5'
23576 3' -52.6 NC_005261.1 + 45382 0.66 0.969161
Target:  5'- -uGCGGCCGGGcccGGGaGCugGAGCUg- -3'
miRNA:   3'- acUGCCGGCUC---UUCgUGugCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 6758 0.66 0.965636
Target:  5'- cGACGGCgcgcucgcggaggCGGGAGGCGCccGCGAggcGCggCg -3'
miRNA:   3'- aCUGCCG-------------GCUCUUCGUG--UGCU---UGaaG- -5'
23576 3' -52.6 NC_005261.1 + 67298 0.66 0.974897
Target:  5'- cGGCGGaCGcGcAGGCGCugGAGCUc- -3'
miRNA:   3'- aCUGCCgGCuC-UUCGUGugCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 104355 0.66 0.974897
Target:  5'- gUGACGcGCCG-GAGGCGgGCGGc---- -3'
miRNA:   3'- -ACUGC-CGGCuCUUCGUgUGCUugaag -5'
23576 3' -52.6 NC_005261.1 + 118389 0.66 0.974897
Target:  5'- aGGaaGCCGAGGAcgccgcgcGCGCGCuGAACUUUu -3'
miRNA:   3'- aCUgcCGGCUCUU--------CGUGUG-CUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 120958 0.66 0.972135
Target:  5'- gGGCGGUCG-GggGUGCACucGCUc- -3'
miRNA:   3'- aCUGCCGGCuCuuCGUGUGcuUGAag -5'
23576 3' -52.6 NC_005261.1 + 22780 0.66 0.972135
Target:  5'- cGA-GGCgGAGGAGUccggccgcgaGCGCGAGCUc- -3'
miRNA:   3'- aCUgCCGgCUCUUCG----------UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 37549 0.66 0.974897
Target:  5'- -cGCGGCCGcGGugcacucGCGCGCGAACc-- -3'
miRNA:   3'- acUGCCGGCuCUu------CGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 87290 0.66 0.965967
Target:  5'- -cACGGCCGcguAGAAGCAgGgGAGCc-- -3'
miRNA:   3'- acUGCCGGC---UCUUCGUgUgCUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.