miRNA display CGI


Results 1 - 20 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 74675 0.66 0.965636
Target:  5'- aUGcCGGCCGcgccagcGGGcacGGCGCGCGGGCa-- -3'
miRNA:   3'- -ACuGCCGGC-------UCU---UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 99306 0.66 0.969161
Target:  5'- cGGCcGCCGGcuuGGCGCGCGGGCcgCg -3'
miRNA:   3'- aCUGcCGGCUcu-UCGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 109798 0.66 0.969161
Target:  5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 21587 0.66 0.962547
Target:  5'- cGGCGGC----GGGCGCGCGGGCcUCg -3'
miRNA:   3'- aCUGCCGgcucUUCGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 68853 0.66 0.968852
Target:  5'- gGACGGCgguaucuCGAGGuccAGCGCGCGcGCg-- -3'
miRNA:   3'- aCUGCCG-------GCUCU---UCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 53048 0.66 0.965967
Target:  5'- cGGC-GCCGuGAAGCGCuucuCGGACg-- -3'
miRNA:   3'- aCUGcCGGCuCUUCGUGu---GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 30327 0.66 0.962547
Target:  5'- --gUGGCCGAGGccgcGGC-CGCGGACa-- -3'
miRNA:   3'- acuGCCGGCUCU----UCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 87290 0.66 0.965967
Target:  5'- -cACGGCCGcguAGAAGCAgGgGAGCc-- -3'
miRNA:   3'- acUGCCGGC---UCUUCGUgUgCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 135986 0.66 0.96854
Target:  5'- cGGCGGCCuGAGuggccgccgguGCGCGgCGGGCUcUCg -3'
miRNA:   3'- aCUGCCGG-CUCuu---------CGUGU-GCUUGA-AG- -5'
23576 3' -52.6 NC_005261.1 + 85665 0.66 0.965967
Target:  5'- cGACGG-CGAGcucGCGCGCGAgucGCUa- -3'
miRNA:   3'- aCUGCCgGCUCuu-CGUGUGCU---UGAag -5'
23576 3' -52.6 NC_005261.1 + 67376 0.66 0.962193
Target:  5'- cGGCGGCCGcccuggaccuggaGGAGGCguACGCGcGCg-- -3'
miRNA:   3'- aCUGCCGGC-------------UCUUCG--UGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 35405 0.66 0.962547
Target:  5'- -cGCGGCgCGAGGcgcagaccGGCGCGCGGcgGCUg- -3'
miRNA:   3'- acUGCCG-GCUCU--------UCGUGUGCU--UGAag -5'
23576 3' -52.6 NC_005261.1 + 104982 0.66 0.965967
Target:  5'- cGACGGCCGgcgGGAuGGCGCGgGGAg--- -3'
miRNA:   3'- aCUGCCGGC---UCU-UCGUGUgCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 105702 0.66 0.965967
Target:  5'- -cGCGGCCGGGGccggggccgGGCgcgGCGCGGACc-- -3'
miRNA:   3'- acUGCCGGCUCU---------UCG---UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 67416 0.66 0.965967
Target:  5'- cGGCGcGCCc-GggGCcgccgGCGCGGACUUUg -3'
miRNA:   3'- aCUGC-CGGcuCuuCG-----UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 16261 0.66 0.969161
Target:  5'- gGGCGGCgCuGGAgcgcGGCACgGCGAGCUg- -3'
miRNA:   3'- aCUGCCG-GcUCU----UCGUG-UGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 6758 0.66 0.965636
Target:  5'- cGACGGCgcgcucgcggaggCGGGAGGCGCccGCGAggcGCggCg -3'
miRNA:   3'- aCUGCCG-------------GCUCUUCGUG--UGCU---UGaaG- -5'
23576 3' -52.6 NC_005261.1 + 39586 0.66 0.969161
Target:  5'- gGGgGGCCGAGGAGUGgCugGAcgACg-- -3'
miRNA:   3'- aCUgCCGGCUCUUCGU-GugCU--UGaag -5'
23576 3' -52.6 NC_005261.1 + 45382 0.66 0.969161
Target:  5'- -uGCGGCCGGGcccGGGaGCugGAGCUg- -3'
miRNA:   3'- acUGCCGGCUC---UUCgUGugCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 57283 0.66 0.965967
Target:  5'- cGAaGGCCGAGuaccuGCGCAgCGGGCg-- -3'
miRNA:   3'- aCUgCCGGCUCuu---CGUGU-GCUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.