miRNA display CGI


Results 41 - 60 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 29840 0.73 0.699247
Target:  5'- -cGCGGCUGcuGGAGCGCGCGGGCg-- -3'
miRNA:   3'- acUGCCGGCu-CUUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 58292 0.73 0.709599
Target:  5'- cGGCGcGCCGGGggGCGCGgGGAg--- -3'
miRNA:   3'- aCUGC-CGGCUCuuCGUGUgCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 36849 0.73 0.709599
Target:  5'- cUGGCGGCCGuggaGGAGGCGC-CgGAGCUg- -3'
miRNA:   3'- -ACUGCCGGC----UCUUCGUGuG-CUUGAag -5'
23576 3' -52.6 NC_005261.1 + 95604 0.73 0.718856
Target:  5'- cGGCGGCCGAGuccccGCuggacuuugcgccGCGCGAGCUg- -3'
miRNA:   3'- aCUGCCGGCUCuu---CG-------------UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 102957 0.73 0.719881
Target:  5'- cGGCGGCCGcGGgcGC-CGCGGGCUcCg -3'
miRNA:   3'- aCUGCCGGC-UCuuCGuGUGCUUGAaG- -5'
23576 3' -52.6 NC_005261.1 + 29420 0.73 0.719881
Target:  5'- cGGCGGCCGcGggGCcCGCGgccGugUUCg -3'
miRNA:   3'- aCUGCCGGCuCuuCGuGUGC---UugAAG- -5'
23576 3' -52.6 NC_005261.1 + 133937 0.73 0.719881
Target:  5'- cGGCGGCCGcGggGCcCGCGgccGugUUCg -3'
miRNA:   3'- aCUGCCGGCuCuuCGuGUGC---UugAAG- -5'
23576 3' -52.6 NC_005261.1 + 27728 0.73 0.719881
Target:  5'- cGACGGCCGuGAcGCugGCcAGCUUg -3'
miRNA:   3'- aCUGCCGGCuCUuCGugUGcUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 84817 0.73 0.730082
Target:  5'- gGACGGCgGGGGGccGCAgACGAGCUc- -3'
miRNA:   3'- aCUGCCGgCUCUU--CGUgUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 85008 0.73 0.730082
Target:  5'- aUGACGGCCGcGggGuCGCGCGGccGCcgCg -3'
miRNA:   3'- -ACUGCCGGCuCuuC-GUGUGCU--UGaaG- -5'
23576 3' -52.6 NC_005261.1 + 42855 0.72 0.740192
Target:  5'- cGGCGcGCCGGGggGC-CGCGAGa--- -3'
miRNA:   3'- aCUGC-CGGCUCuuCGuGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 115546 0.72 0.747211
Target:  5'- cGGCGGCUGgugcagguccguguGGcAGCACACGAACg-- -3'
miRNA:   3'- aCUGCCGGC--------------UCuUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 73602 0.72 0.750203
Target:  5'- cGGCGGCCGc-GAGCGCGCGGcCcgUCg -3'
miRNA:   3'- aCUGCCGGCucUUCGUGUGCUuGa-AG- -5'
23576 3' -52.6 NC_005261.1 + 71493 0.72 0.750203
Target:  5'- cGGCGGCC-AGguGCGCGCGAAagUCg -3'
miRNA:   3'- aCUGCCGGcUCuuCGUGUGCUUgaAG- -5'
23576 3' -52.6 NC_005261.1 + 12578 0.72 0.750203
Target:  5'- cGG-GGCCGAGAGGgGCGCcuagcggaggauGGACUUCa -3'
miRNA:   3'- aCUgCCGGCUCUUCgUGUG------------CUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 56971 0.72 0.760102
Target:  5'- aGGCGGCCGGGGAGaACuCGcGCUUUu -3'
miRNA:   3'- aCUGCCGGCUCUUCgUGuGCuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 133078 0.72 0.760102
Target:  5'- cGACGcggcccGCCGGgccGAGGCGCGCGAGCg-- -3'
miRNA:   3'- aCUGC------CGGCU---CUUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 104717 0.72 0.760102
Target:  5'- gGACGGCCGAG-GGCGCGuCGuGCcgCg -3'
miRNA:   3'- aCUGCCGGCUCuUCGUGU-GCuUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 28561 0.72 0.760102
Target:  5'- cGACGcggcccGCCGGgccGAGGCGCGCGAGCg-- -3'
miRNA:   3'- aCUGC------CGGCU---CUUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 3413 0.72 0.769881
Target:  5'- cGGCGGgCUGAaGAGCGCGCGGGCc-- -3'
miRNA:   3'- aCUGCC-GGCUcUUCGUGUGCUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.