miRNA display CGI


Results 41 - 60 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 69511 0.66 0.969161
Target:  5'- cGGCGGCgGGcugccGGAGCugGCGCGGGCg-- -3'
miRNA:   3'- aCUGCCGgCU-----CUUCG--UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 86945 0.66 0.969161
Target:  5'- cGGCGGgcuggucaaagaCCGuGAAGCACACGuccgGCggCa -3'
miRNA:   3'- aCUGCC------------GGCuCUUCGUGUGCu---UGaaG- -5'
23576 3' -52.6 NC_005261.1 + 5281 0.66 0.969161
Target:  5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 122910 0.66 0.969161
Target:  5'- gGACGGCguuGGAGCGCAcgcCGAGCa-- -3'
miRNA:   3'- aCUGCCGgcuCUUCGUGU---GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 97120 0.66 0.969161
Target:  5'- -cGCGGCCG-GAGGCGcCGCGGccacGCUc- -3'
miRNA:   3'- acUGCCGGCuCUUCGU-GUGCU----UGAag -5'
23576 3' -52.6 NC_005261.1 + 114374 0.66 0.969161
Target:  5'- cGGUGGCCGAGAAGUACGu--GCUc- -3'
miRNA:   3'- aCUGCCGGCUCUUCGUGUgcuUGAag -5'
23576 3' -52.6 NC_005261.1 + 84955 0.66 0.969161
Target:  5'- cGGCGGCCGccGAGGCgu-CGGGCgcgUCc -3'
miRNA:   3'- aCUGCCGGCu-CUUCGuguGCUUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 90728 0.66 0.969161
Target:  5'- cGACcgcugGGCCGcgccuGAGGCGCugGcgcggGACUUCc -3'
miRNA:   3'- aCUG-----CCGGCu----CUUCGUGugC-----UUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 68853 0.66 0.968852
Target:  5'- gGACGGCgguaucuCGAGGuccAGCGCGCGcGCg-- -3'
miRNA:   3'- aCUGCCG-------GCUCU---UCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 135986 0.66 0.96854
Target:  5'- cGGCGGCCuGAGuggccgccgguGCGCGgCGGGCUcUCg -3'
miRNA:   3'- aCUGCCGG-CUCuu---------CGUGU-GCUUGA-AG- -5'
23576 3' -52.6 NC_005261.1 + 31469 0.66 0.96854
Target:  5'- cGGCGGCCuGAGuggccgccgguGCGCGgCGGGCUcUCg -3'
miRNA:   3'- aCUGCCGG-CUCuu---------CGUGU-GCUUGA-AG- -5'
23576 3' -52.6 NC_005261.1 + 105702 0.66 0.965967
Target:  5'- -cGCGGCCGGGGccggggccgGGCgcgGCGCGGACc-- -3'
miRNA:   3'- acUGCCGGCUCU---------UCG---UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 67416 0.66 0.965967
Target:  5'- cGGCGcGCCc-GggGCcgccgGCGCGGACUUUg -3'
miRNA:   3'- aCUGC-CGGcuCuuCG-----UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 85665 0.66 0.965967
Target:  5'- cGACGG-CGAGcucGCGCGCGAgucGCUa- -3'
miRNA:   3'- aCUGCCgGCUCuu-CGUGUGCU---UGAag -5'
23576 3' -52.6 NC_005261.1 + 104982 0.66 0.965967
Target:  5'- cGACGGCCGgcgGGAuGGCGCGgGGAg--- -3'
miRNA:   3'- aCUGCCGGC---UCU-UCGUGUgCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 53048 0.66 0.965967
Target:  5'- cGGC-GCCGuGAAGCGCuucuCGGACg-- -3'
miRNA:   3'- aCUGcCGGCuCUUCGUGu---GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 87290 0.66 0.965967
Target:  5'- -cACGGCCGcguAGAAGCAgGgGAGCc-- -3'
miRNA:   3'- acUGCCGGC---UCUUCGUgUgCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 125468 0.66 0.965967
Target:  5'- gGGC-GCCGAGAAaGC-CGCGGGCg-- -3'
miRNA:   3'- aCUGcCGGCUCUU-CGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 57283 0.66 0.965967
Target:  5'- cGAaGGCCGAGuaccuGCGCAgCGGGCg-- -3'
miRNA:   3'- aCUgCCGGCUCuu---CGUGU-GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 138136 0.66 0.965967
Target:  5'- cGACGGCCGgcgGGAuGGCGCGgGGAg--- -3'
miRNA:   3'- aCUGCCGGC---UCU-UCGUGUgCUUgaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.