miRNA display CGI


Results 1 - 20 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 138200 0.72 0.769881
Target:  5'- gGGCGGgCGGGggGCAgGgCGGACggCg -3'
miRNA:   3'- aCUGCCgGCUCuuCGUgU-GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 138136 0.66 0.965967
Target:  5'- cGACGGCCGgcgGGAuGGCGCGgGGAg--- -3'
miRNA:   3'- aCUGCCGGC---UCU-UCGUGUgCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 136826 0.67 0.958895
Target:  5'- aGACGGCgcccccgcgCGuGAGGUagaGCAUGAACUUg -3'
miRNA:   3'- aCUGCCG---------GCuCUUCG---UGUGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 136251 0.78 0.415727
Target:  5'- aGAgGGCCGAGAgaaGGCACGCGAGa--- -3'
miRNA:   3'- aCUgCCGGCUCU---UCGUGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 135986 0.66 0.96854
Target:  5'- cGGCGGCCuGAGuggccgccgguGCGCGgCGGGCUcUCg -3'
miRNA:   3'- aCUGCCGG-CUCuu---------CGUGU-GCUUGA-AG- -5'
23576 3' -52.6 NC_005261.1 + 135813 0.66 0.974897
Target:  5'- cGACGcGCCguucGAGGAGUACAUcccugGGGCUUg -3'
miRNA:   3'- aCUGC-CGG----CUCUUCGUGUG-----CUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 135200 0.68 0.926473
Target:  5'- aGcAUGGCCGAGGcGGCGCAgagggccacggcCGAGCgcgUCg -3'
miRNA:   3'- aC-UGCCGGCUCU-UCGUGU------------GCUUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 134859 0.66 0.975944
Target:  5'- cUGGCGGCCGcgcucgcggcccugaAGGccGGCGCGcCGGGCg-- -3'
miRNA:   3'- -ACUGCCGGC---------------UCU--UCGUGU-GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 134711 0.7 0.842583
Target:  5'- aGGCGGCCGcc--GCGCugGAGCg-- -3'
miRNA:   3'- aCUGCCGGCucuuCGUGugCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 134222 0.66 0.974897
Target:  5'- cGGCGGCCGGcagcgucggcGuGGCGCACGcGCc-- -3'
miRNA:   3'- aCUGCCGGCU----------CuUCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 133937 0.73 0.719881
Target:  5'- cGGCGGCCGcGggGCcCGCGgccGugUUCg -3'
miRNA:   3'- aCUGCCGGCuCuuCGuGUGC---UugAAG- -5'
23576 3' -52.6 NC_005261.1 + 133279 0.67 0.958517
Target:  5'- -cGCGGCCGGGGgcgccugGGCcgcgGCGCGGGCg-- -3'
miRNA:   3'- acUGCCGGCUCU-------UCG----UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 133078 0.72 0.760102
Target:  5'- cGACGcggcccGCCGGgccGAGGCGCGCGAGCg-- -3'
miRNA:   3'- aCUGC------CGGCU---CUUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 132062 0.67 0.958895
Target:  5'- gUGGCGGCCGAGGu---CGCGGccGCcgUCg -3'
miRNA:   3'- -ACUGCCGGCUCUucguGUGCU--UGa-AG- -5'
23576 3' -52.6 NC_005261.1 + 131879 0.69 0.874326
Target:  5'- cUGGCGGCCGccGccGCACGCGAcgGCg-- -3'
miRNA:   3'- -ACUGCCGGCu-CuuCGUGUGCU--UGaag -5'
23576 3' -52.6 NC_005261.1 + 131722 0.67 0.955006
Target:  5'- aGGCGGCgcgcuucggUGGGugcuGCACGCGGACggCa -3'
miRNA:   3'- aCUGCCG---------GCUCuu--CGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 131587 0.76 0.521529
Target:  5'- cGACGGCCGAGGccuacGCGCGCGcGCg-- -3'
miRNA:   3'- aCUGCCGGCUCUu----CGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 130634 0.7 0.858891
Target:  5'- -aGCGGCCGGGuAAGCAgGCGcGCg-- -3'
miRNA:   3'- acUGCCGGCUC-UUCGUgUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 129582 0.67 0.946498
Target:  5'- aGGCGGCCGcgcgccgcGGGA-CACGCGGcaAUUUCg -3'
miRNA:   3'- aCUGCCGGC--------UCUUcGUGUGCU--UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 128889 0.67 0.958895
Target:  5'- cGGgGGCCGGGuGGgAgGCGGGCgUCg -3'
miRNA:   3'- aCUgCCGGCUCuUCgUgUGCUUGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.