miRNA display CGI


Results 41 - 60 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 122056 0.67 0.93995
Target:  5'- gGAUGGCCGAGAucauguacgggucGCGCACGcccGCg-- -3'
miRNA:   3'- aCUGCCGGCUCUu------------CGUGUGCu--UGaag -5'
23576 3' -52.6 NC_005261.1 + 121637 0.69 0.908784
Target:  5'- cGGCGGCCGccgccGGCgaGCGCGGGCUg- -3'
miRNA:   3'- aCUGCCGGCucu--UCG--UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 121547 0.74 0.625646
Target:  5'- cGACGGCgCG-GucGCcuACACGGACUUCa -3'
miRNA:   3'- aCUGCCG-GCuCuuCG--UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 121500 0.68 0.931333
Target:  5'- gGGCGGCgGGGcGGGCAUggggccgucgaugGCGAGCUccUCg -3'
miRNA:   3'- aCUGCCGgCUC-UUCGUG-------------UGCUUGA--AG- -5'
23576 3' -52.6 NC_005261.1 + 121437 0.68 0.931333
Target:  5'- gGGCGGCgGGGcGGGCAUggggccgucgaugGCGAGCUccUCg -3'
miRNA:   3'- aCUGCCGgCUC-UUCGUG-------------UGCUUGA--AG- -5'
23576 3' -52.6 NC_005261.1 + 120958 0.66 0.972135
Target:  5'- gGGCGGUCG-GggGUGCACucGCUc- -3'
miRNA:   3'- aCUGCCGGCuCuuCGUGUGcuUGAag -5'
23576 3' -52.6 NC_005261.1 + 118389 0.66 0.974897
Target:  5'- aGGaaGCCGAGGAcgccgcgcGCGCGCuGAACUUUu -3'
miRNA:   3'- aCUgcCGGCUCUU--------CGUGUG-CUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 118287 0.7 0.83412
Target:  5'- gUGACGGCCGccgcGGGCACcgggGCGcACUUCc -3'
miRNA:   3'- -ACUGCCGGCuc--UUCGUG----UGCuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 117699 0.68 0.920831
Target:  5'- aGGcCGGCCcuGAGGccGGCGCGCGGGCc-- -3'
miRNA:   3'- aCU-GCCGG--CUCU--UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 117369 0.67 0.946046
Target:  5'- ---aGGCCGcccuccuGGAGGCGCGCu-GCUUCg -3'
miRNA:   3'- acugCCGGC-------UCUUCGUGUGcuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 115546 0.72 0.747211
Target:  5'- cGGCGGCUGgugcagguccguguGGcAGCACACGAACg-- -3'
miRNA:   3'- aCUGCCGGC--------------UCuUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 114783 1.1 0.004418
Target:  5'- aUGACGGCCGAGAAGCACACGAACUUCu -3'
miRNA:   3'- -ACUGCCGGCUCUUCGUGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 114374 0.66 0.969161
Target:  5'- cGGUGGCCGAGAAGUACGu--GCUc- -3'
miRNA:   3'- aCUGCCGGCUCUUCGUGUgcuUGAag -5'
23576 3' -52.6 NC_005261.1 + 113912 0.72 0.779528
Target:  5'- cGAUGGCCGAGGcAGCGgGCGcGGCg-- -3'
miRNA:   3'- aCUGCCGGCUCU-UCGUgUGC-UUGaag -5'
23576 3' -52.6 NC_005261.1 + 112809 0.73 0.678374
Target:  5'- -cACGGCCGGGGAcgcGCugACGGGCUcCa -3'
miRNA:   3'- acUGCCGGCUCUU---CGugUGCUUGAaG- -5'
23576 3' -52.6 NC_005261.1 + 111493 0.74 0.646783
Target:  5'- aGAUGGCaagCGAGggGCGgACGAGCg-- -3'
miRNA:   3'- aCUGCCG---GCUCuuCGUgUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 110390 0.66 0.972135
Target:  5'- cGACGGa-GAGAGGCugGCuGGCUc- -3'
miRNA:   3'- aCUGCCggCUCUUCGugUGcUUGAag -5'
23576 3' -52.6 NC_005261.1 + 110342 0.68 0.936992
Target:  5'- cGGCGGCCGAu--GCGCGcCGggUUa- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGU-GCuuGAag -5'
23576 3' -52.6 NC_005261.1 + 109798 0.66 0.969161
Target:  5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 109395 0.68 0.93186
Target:  5'- cGACGGCCGccucAGC-CGCGGccgccucgGCUUCg -3'
miRNA:   3'- aCUGCCGGCucu-UCGuGUGCU--------UGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.