miRNA display CGI


Results 61 - 80 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 97198 0.67 0.958895
Target:  5'- -cGCGGCCG-GAAGCGcCGCGGccacGCUc- -3'
miRNA:   3'- acUGCCGGCuCUUCGU-GUGCU----UGAag -5'
23576 3' -52.6 NC_005261.1 + 28762 0.67 0.958517
Target:  5'- -cGCGGCCGGGGgcgccugGGCcgcgGCGCGGGCg-- -3'
miRNA:   3'- acUGCCGGCUCU-------UCG----UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 122633 0.66 0.974897
Target:  5'- cGGCGaGCgCGAGGcccGGCGCGCGuACg-- -3'
miRNA:   3'- aCUGC-CG-GCUCU---UCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 59508 0.66 0.97409
Target:  5'- cGGCGGUCGcacgcgcgcccuGGAgcAGCcccgccgccaccgcGCGCGGGCUUCu -3'
miRNA:   3'- aCUGCCGGC------------UCU--UCG--------------UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 88548 0.66 0.972135
Target:  5'- aGACGaCCGAGuacccGAGCGCcgGCGAcgcgucccGCUUCg -3'
miRNA:   3'- aCUGCcGGCUC-----UUCGUG--UGCU--------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 5281 0.66 0.969161
Target:  5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 84955 0.66 0.969161
Target:  5'- cGGCGGCCGccGAGGCgu-CGGGCgcgUCc -3'
miRNA:   3'- aCUGCCGGCu-CUUCGuguGCUUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 31469 0.66 0.96854
Target:  5'- cGGCGGCCuGAGuggccgccgguGCGCGgCGGGCUcUCg -3'
miRNA:   3'- aCUGCCGG-CUCuu---------CGUGU-GCUUGA-AG- -5'
23576 3' -52.6 NC_005261.1 + 1184 0.66 0.965967
Target:  5'- -cGCGGCCGGGGccggggccgGGCgcgGCGCGGACc-- -3'
miRNA:   3'- acUGCCGGCUCU---------UCG---UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 80059 0.66 0.965636
Target:  5'- cUGGCGGCgggcgCGGGggGCgugggggACGCGGACc-- -3'
miRNA:   3'- -ACUGCCG-----GCUCuuCG-------UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 135200 0.68 0.926473
Target:  5'- aGcAUGGCCGAGGcGGCGCAgagggccacggcCGAGCgcgUCg -3'
miRNA:   3'- aC-UGCCGGCUCU-UCGUGU------------GCUUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 121500 0.68 0.931333
Target:  5'- gGGCGGCgGGGcGGGCAUggggccgucgaugGCGAGCUccUCg -3'
miRNA:   3'- aCUGCCGgCUC-UUCGUG-------------UGCUUGA--AG- -5'
23576 3' -52.6 NC_005261.1 + 50954 0.67 0.955006
Target:  5'- -cGCGGCCGuGGucgacuacGGCGCGCGAAaccUCu -3'
miRNA:   3'- acUGCCGGCuCU--------UCGUGUGCUUga-AG- -5'
23576 3' -52.6 NC_005261.1 + 82993 0.67 0.955006
Target:  5'- aGGCGGCCGccucGCGCACcGAGCcgccgUCg -3'
miRNA:   3'- aCUGCCGGCucuuCGUGUG-CUUGa----AG- -5'
23576 3' -52.6 NC_005261.1 + 127383 0.67 0.950448
Target:  5'- uUGGCGGCggCGAGGAgcccggcgcccucGCACACGAGg--- -3'
miRNA:   3'- -ACUGCCG--GCUCUU-------------CGUGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 129582 0.67 0.946498
Target:  5'- aGGCGGCCGcgcgccgcGGGA-CACGCGGcaAUUUCg -3'
miRNA:   3'- aCUGCCGGC--------UCUUcGUGUGCU--UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 128146 0.67 0.941871
Target:  5'- cGACGGUCGccGggGC-CGCGGGCc-- -3'
miRNA:   3'- aCUGCCGGCu-CuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 13674 0.67 0.941871
Target:  5'- gGGgGGgCGcGggGCGCGCGGGCg-- -3'
miRNA:   3'- aCUgCCgGCuCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 127854 0.68 0.936992
Target:  5'- gGGCGGUCGcGgcGCcaggGCACGAGCgggagUCg -3'
miRNA:   3'- aCUGCCGGCuCuuCG----UGUGCUUGa----AG- -5'
23576 3' -52.6 NC_005261.1 + 35768 0.68 0.93186
Target:  5'- cGGCucgGGCCGAGAcaggaGGCcCGCGGGCg-- -3'
miRNA:   3'- aCUG---CCGGCUCU-----UCGuGUGCUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.