miRNA display CGI


Results 101 - 120 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 11893 0.7 0.529022
Target:  5'- cCCGCAcGCGCgC-CCgcCGCGGGC-CCGg -3'
miRNA:   3'- -GGCGU-CGUG-GuGGauGUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 12106 0.69 0.597896
Target:  5'- gCGCGGCGCCAgCUcuaGCGCcaggauGGCGCCc -3'
miRNA:   3'- gGCGUCGUGGUgGA---UGUGc-----CCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 12197 0.71 0.481651
Target:  5'- aUGCAGCGCCGCC-GC-CGGuGcCGCCGc -3'
miRNA:   3'- gGCGUCGUGGUGGaUGuGCC-C-GUGGC- -5'
23576 5' -59.1 NC_005261.1 + 12293 0.73 0.402075
Target:  5'- uCCGCGucCGCCGCggGCACGGGCGCg- -3'
miRNA:   3'- -GGCGUc-GUGGUGgaUGUGCCCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 12530 0.74 0.353114
Target:  5'- cCCGCGcCGCCGCCgaauuuaUACGCGGGgGCCc -3'
miRNA:   3'- -GGCGUcGUGGUGG-------AUGUGCCCgUGGc -5'
23576 5' -59.1 NC_005261.1 + 12567 0.69 0.578004
Target:  5'- uCgGCGGCACguaugaCGCgCUGCugGGGgACCGc -3'
miRNA:   3'- -GgCGUCGUG------GUG-GAUGugCCCgUGGC- -5'
23576 5' -59.1 NC_005261.1 + 12616 0.68 0.65393
Target:  5'- gCCGCGcCGCCACCacgguguaguccgGCGCGGucuggggccGCGCCGg -3'
miRNA:   3'- -GGCGUcGUGGUGGa------------UGUGCC---------CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 12734 0.72 0.41904
Target:  5'- cCCGcCGGC-CC-CCUGgGCGGGC-CCGg -3'
miRNA:   3'- -GGC-GUCGuGGuGGAUgUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 13026 0.68 0.667908
Target:  5'- cCCcCAGCACCACgaGC-CaGGGCGCgGg -3'
miRNA:   3'- -GGcGUCGUGGUGgaUGuG-CCCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 13054 0.76 0.240376
Target:  5'- gCCGCGcGCGCC-CCUGC-CGGGCGCg- -3'
miRNA:   3'- -GGCGU-CGUGGuGGAUGuGCCCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 13075 0.68 0.657928
Target:  5'- aCCGCGGCcCCAau--CAC-GGCGCCGg -3'
miRNA:   3'- -GGCGUCGuGGUggauGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 13321 0.66 0.764805
Target:  5'- uCCGCGGCuucCCGCgUggcgGCGgGGGCGgCCa -3'
miRNA:   3'- -GGCGUCGu--GGUGgA----UGUgCCCGU-GGc -5'
23576 5' -59.1 NC_005261.1 + 13323 0.66 0.764805
Target:  5'- aCGCAGCGCCcucgcACUcGCGCGGcCAgCGg -3'
miRNA:   3'- gGCGUCGUGG-----UGGaUGUGCCcGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 13657 0.67 0.69765
Target:  5'- gCCGUGcCGCCGCCgcgggggggGCGCGgGGCGCgCGg -3'
miRNA:   3'- -GGCGUcGUGGUGGa--------UGUGC-CCGUG-GC- -5'
23576 5' -59.1 NC_005261.1 + 13768 0.66 0.792065
Target:  5'- aCGUgGGCGCC-CCUGa--GGGCACCc -3'
miRNA:   3'- gGCG-UCGUGGuGGAUgugCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 13882 0.66 0.755481
Target:  5'- gCGCAGCaauGCCGCCcAC-UGaGGCGCUGc -3'
miRNA:   3'- gGCGUCG---UGGUGGaUGuGC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 13985 0.69 0.627899
Target:  5'- gCCGC-GCGgCGCCUGCcCGcGGCGgCGg -3'
miRNA:   3'- -GGCGuCGUgGUGGAUGuGC-CCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 14126 0.82 0.111487
Target:  5'- aCUGCGGUGCCggcccugugcgcGCgCUACGCGGGCGCCGg -3'
miRNA:   3'- -GGCGUCGUGG------------UG-GAUGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 14268 0.66 0.774016
Target:  5'- uUGUAGCGCuCGCgga-GCGGGCGCUGc -3'
miRNA:   3'- gGCGUCGUG-GUGgaugUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 14308 0.68 0.667908
Target:  5'- -aGCgGGCGCgCACCUGCuCGGGCcgcACCc -3'
miRNA:   3'- ggCG-UCGUG-GUGGAUGuGCCCG---UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.