miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 68425 0.66 0.956863
Target:  5'- gGCGCGuCCUGC-ACCUgUUCGaCGUGc -3'
miRNA:   3'- -CGCGU-GGGUGuUGGAgAAGCaGCACu -5'
23577 3' -53.4 NC_005261.1 + 68632 0.69 0.88654
Target:  5'- cGCGCccGCCCGCGACCgaggUCaUCGUCa--- -3'
miRNA:   3'- -CGCG--UGGGUGUUGG----AGaAGCAGcacu -5'
23577 3' -53.4 NC_005261.1 + 68812 0.66 0.964074
Target:  5'- cGCGgACCCACAACgC-CUggGcCGUGGc -3'
miRNA:   3'- -CGCgUGGGUGUUG-GaGAagCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 68875 0.72 0.759226
Target:  5'- aGCGCGCgCGCGGCCgcgUCGUCGc-- -3'
miRNA:   3'- -CGCGUGgGUGUUGGagaAGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 69290 0.68 0.924134
Target:  5'- cGCGCGCCUcguuCAGCgUC-UCGUCGa-- -3'
miRNA:   3'- -CGCGUGGGu---GUUGgAGaAGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 69369 0.67 0.94338
Target:  5'- cGCGCGCgCugGACCUCgagaugaccgcCGUCcUGAg -3'
miRNA:   3'- -CGCGUGgGugUUGGAGaa---------GCAGcACU- -5'
23577 3' -53.4 NC_005261.1 + 69614 0.67 0.952911
Target:  5'- cGCGCGCCCGCcGCC-CggcaCGgCGUGc -3'
miRNA:   3'- -CGCGUGGGUGuUGGaGaa--GCaGCACu -5'
23577 3' -53.4 NC_005261.1 + 70583 0.67 0.939623
Target:  5'- cGCGCggacgggcgGCCCGCGuUCUCggCGUaCGUGGu -3'
miRNA:   3'- -CGCG---------UGGGUGUuGGAGaaGCA-GCACU- -5'
23577 3' -53.4 NC_005261.1 + 72588 0.68 0.910756
Target:  5'- cGCGCGCCagagGCGagaggcggagugguGCCUCUUCGgcgCGUa- -3'
miRNA:   3'- -CGCGUGGg---UGU--------------UGGAGAAGCa--GCAcu -5'
23577 3' -53.4 NC_005261.1 + 73964 0.68 0.924134
Target:  5'- gGCGCGCCCGgGccgucuGCCUCaUCGUgGagcUGAa -3'
miRNA:   3'- -CGCGUGGGUgU------UGGAGaAGCAgC---ACU- -5'
23577 3' -53.4 NC_005261.1 + 74454 0.66 0.967344
Target:  5'- cGCGCGCgCACGuggACCUCgg---CGUGGg -3'
miRNA:   3'- -CGCGUGgGUGU---UGGAGaagcaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 75669 0.72 0.729658
Target:  5'- cGCGCGCgCAgAACCUCUUCcUCGccGAg -3'
miRNA:   3'- -CGCGUGgGUgUUGGAGAAGcAGCa-CU- -5'
23577 3' -53.4 NC_005261.1 + 79034 0.72 0.719615
Target:  5'- gGgGCGCCCGCGcCCUUggCGUCGUc- -3'
miRNA:   3'- -CgCGUGGGUGUuGGAGaaGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 79158 0.67 0.952911
Target:  5'- gGCGCACCCGCGcGCgCUCUcCG-CGg-- -3'
miRNA:   3'- -CGCGUGGGUGU-UG-GAGAaGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 83188 0.76 0.494667
Target:  5'- uGCGCACCCGCAGCUgccgCGUgaCGUGGu -3'
miRNA:   3'- -CGCGUGGGUGUUGGagaaGCA--GCACU- -5'
23577 3' -53.4 NC_005261.1 + 83579 0.66 0.959122
Target:  5'- cGCgGCGCCCGCGGCCgccagcagcgCGUCGc-- -3'
miRNA:   3'- -CG-CGUGGGUGUUGGagaa------GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 85034 0.67 0.939623
Target:  5'- cCGCGCCC-CGGCCacgaUCGcCGUGAg -3'
miRNA:   3'- cGCGUGGGuGUUGGaga-AGCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 86208 0.69 0.879441
Target:  5'- gGCGUugGCCucguaCACGGCCUCcUCGUCGUc- -3'
miRNA:   3'- -CGCG--UGG-----GUGUUGGAGaAGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 88385 0.66 0.970397
Target:  5'- cGCGCGCCCAagguguACCUCgaCGgCGagGAg -3'
miRNA:   3'- -CGCGUGGGUgu----UGGAGaaGCaGCa-CU- -5'
23577 3' -53.4 NC_005261.1 + 88711 0.66 0.970397
Target:  5'- gGCgGCugGCCCGCGACCUUUUCGg----- -3'
miRNA:   3'- -CG-CG--UGGGUGUUGGAGAAGCagcacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.